NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS90058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90058.1 Public Mus musculus 6 Rnf181 23 108 98 CCDS HistoryNCBI Gene:66510Re-query CCDS DB by CCDS ID:90058.1Re-query CCDS DB by GeneID:66510See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069595.12 ENSMUSP00000070370.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069595.12Link to Ensembl Protein Viewer:ENSMUSP00000070370.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069595Re-query CCDS DB by Protein ID:ENSMUSP00000070370
Original member Current member NCBI NM_001331168.1 NP_001318097.1 Accepted alive Link to Nucleotide Sequence:NM_001331168.1Link to Protein Sequence:NP_001318097.1Re-query CCDS DB by Nucleotide ID:NM_001331168Re-query CCDS DB by Protein ID:NP_001318097Link to BLAST:NP_001318097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001318097.1 97 Q9CY62-3 97 100% 0 0

Chromosomal Locations for CCDS 90058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72360583 72360642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72360875 72360949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72361117 72361226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72362317 72362365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGGCGTCTTATTTTGATGAGCACGACTGCGAGCCGTTGAACCCTGAGCATCTCAAGTGCCCCGTGTGCC
TTTTGGAATTTGAGGCGGAGGAGACTGTGATTGAGATGCCCTGCCATCATCTCTTCCATTCCAACTGCAT
TCTGCCCTGGCTAAGTAAGACAAATTCCTGCCCTCTGTGCCGCCATGAGCTGCCCACTGATGATGACAGC
TATGAAGAGCACAAGAAAGACAAGGCTCGCAGGCAGCAGCAGCAGCACCGCCTGGAGAACCTCCACGGAG
CCATGTACACGTGA

Translation (97 aa):
MASYFDEHDCEPLNPEHLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDS
YEEHKKDKARRQQQQHRLENLHGAMYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH