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Report for CCDS11451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11451.1 Public Homo sapiens 17 VAT1 24 110 108 CCDS HistoryNCBI Gene:10493Re-query CCDS DB by CCDS ID:11451.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11451.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355653.8 ENSP00000347872.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355653.8Link to Ensembl Protein Viewer:ENSP00000347872.2Re-query CCDS DB by Nucleotide ID:ENST00000355653Re-query CCDS DB by Protein ID:ENSP00000347872
Original member Current member NCBI NM_006373.4 NP_006364.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006373.4Link to Protein Sequence:NP_006364.2Re-query CCDS DB by Nucleotide ID:NM_006373Re-query CCDS DB by Protein ID:NP_006364Link to BLAST:NP_006364.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006364.2 393 Q99536-1 393 100% 0 0

Chromosomal Locations for CCDS 11451.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 43016061 43016144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43016307 43016548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43017841 43017930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43018036 43018206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43018592 43018799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43021936 43022322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGTCCGACGAGAGAGAGGTAGCCGAGGCAGCGACCGGGGAAGACGCCTCTTCGCCGCCTCCGAAAACCG
AG
GCAGCGAGCGACCCCCAGCATCCCGCGGCCTCCGAAGGGGCCGCCGCCGCCGCCGCCTCGCCGCCACT
G
CTGCGCTGCCTAGTGCTCACCGGCTTTGGAGGCTACGACAAGGTGAAGCTGCAGAGCCGGCCGGCAGCG
CCC
CCGGCCCCTGGGCCCGGCCAGCTGACGCTGCGTCTGCGGGCCTGCGGGCTCAACTTCGCAGACCTCA
TG
GCTAGGCAGGGGCTGTACGACCGTCTCCCGCCTCTGCCTGTCACTCCGGGCATGGAGGGCGCGGGTGT
T
GTGATCGCAGTGGGCGAGGGAGTCAGCGACCGCAAGGCAGGAGACCGGGTGATGGTGTTGAACCGGTCA
GGG
ATGTGGCAGGAAGAGGTGACTGTGCCCTCGGTCCAGACCTTCCTGATTCCTGAGGCCATGACCTTTG
AG
GAAGCTGCTGCCTTGCTCGTCAATTACATTACAGCCTACATGGTCCTCTTTGACTTCGGCAACCTACA
G
CCTGGCCACAGCGTCTTGGTACACATGGCTGCAGGGGGTGTGGGTATGGCTGCCGTGCAGCTGTGCCGT
ACA
GTGGAGAATGTGACAGTGTTCGGAACGGCCTCGGCCAGCAAGCACGAGGCACTGAAGGAGAATGGGG
TC
ACACATCCCATCGACTATCACACGACTGACTACGTGGATGAGATCAAGAAGATTTCCCCTAAAGGAGT
G
GACATTGTCATGGACCCTCTGGGTGGGTCAGATACTGCCAAGGGCTACAACCTCCTGAAACCCATGGGC
AAA
GTCGTCACCTATGGAATGGCCAACCTGCTGACGGGCCCCAAACGGAACCTGATGGCCCTGGCCCGGA
CA
TGGTGGAATCAGTTCAGCGTGACAGCTCTGCAGCTGCTGCAGGCCAACCGGGCTGTGTGTGGCTTCCA
C
CTGGGCTACCTGGATGGTGAGGTGGAGCTGGTCAGTGGTGTGGTGGCCCGCCTCCTGGCTCTGTACAAC
CAG
GGCCACATCAAGCCCCACATTGACTCAGTCTGGCCCTTCGAGAAGGTGGCTGATGCCATGAAACAGA
TG
CAGGAGAAGAAGAATGTGGGCAAGGTCCTCCTGGTTCCAGGGCCAGAGAAGGAGAACTAG


Translation (393 aa):
MSDEREVAEAATGEDASSPPPKTEAASDPQHPAASEGAAAAAASPPLLRCLVLTGFGGYDKVKLQSRPAA
P
PAPGPGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDRK
AGDRVMVLNRS
G
MWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFDFGNLQPGHSVLVHMAA
GGVGMAAVQLCR
T
VENVTVFGTASASKHEALKENGVTHPIDYHTTDYVDEIKKISPK
GVDIVMDPLGGSDTAKGYNLLKPMG
K
VVTY
GMANLLTGPKRNLMALARTWWNQFSVTALQLLQANRAVCGFHLGYLDGEVELVSGVVARLLALYN
Q
GHIKPHIDSVWPFEK
VADAMKQMQEKKNVGKVLLVPGPEKEN



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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