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Report for CCDS23232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23232.1 Reviewed, update pending Mus musculus 9 Clk3 23 108 98 CCDS HistoryNCBI Gene:102414Re-query CCDS DB by CCDS ID:23232.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065330.7 ENSMUSP00000067341.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065330.7Link to Ensembl Protein Viewer:ENSMUSP00000067341.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000065330Re-query CCDS DB by Protein ID:ENSMUSP00000067341
Original member NCBI NM_007713.4 NP_031739.3 Updated not alive Link to Nucleotide Sequence:NM_007713.4Link to Protein Sequence:NP_031739.3Re-query CCDS DB by Nucleotide ID:NM_007713Re-query CCDS DB by Protein ID:NP_031739
Current member NCBI NM_007713.5 NP_031739.4 Pending alive Link to Nucleotide Sequence:NM_007713.5Link to Protein Sequence:NP_031739.4Re-query CCDS DB by Nucleotide ID:NM_007713Re-query CCDS DB by Protein ID:NP_031739Link to BLAST:NP_031739.4

Chromosomal Locations for CCDS 23232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57750945 57751121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57751737 57751827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57752115 57752194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57752645 57752727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57753271 57753400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57753501 57753595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57754502 57754668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57755252 57755368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57758284 57758350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57758627 57758723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57760824 57761040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57761716 57761867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57765074 57765517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGCCGGTCCTCTCCGCGCGCAGGAAGAGGCTGGCGAGCACAGCTGGGCCGCGGCGGGGAAGCGGCCCCA
GCCTGGCAGTCCGGTGGGTTCCTCCTTTAGGCCCAGAGCCGTCCTCAGACCGTGGTCGCGCACCGATGCG
GCCTCGGGGGCCTACGTGCAGCACCACACGGAGAGGGGCAGGCCGCGGCCCGAGGCTGCTCCCGGGACCT
CCGGGAAGAGACCTCCACCGATGTCGCCCGGACCCTGGCGGGGCAGGCCAGTCCCCCAGAGTCTGCGAGT
TCGGGGCTAGAGCGGTCAGGCCTCTGGGCCGGGTCGAGCCCGGGCCGCCGACGGCTGCGTCACGCGAGGG
GGCGGTGCTGCCACGGGCGGAGGCCAGAGCCGGAAGCGGAAGAGGCGCTCGGAGTGGGGAGTGGGGCCTA
GCCGCAGCCGGAGCCTGGGAGACGATGCATCACTGTAAGCGATACCGTTCCCCAGAGCCAGACCCATACC
TGAGCTACCGCTGGAAGAGGAGGCGGTCTTACAGTCGGGAGCATGAAGGTCGACTACGATACCCATCCCG
AAGGGAGCCTCCCCCACGGAGATCACGGTCCAGAAGCCATGATCGTATACCCTACCAGCGGAGGTACCGG
GAACACCGTGACAGTGATACGTATCGGTGTGAAGAGCGGAGCCCATCTTTTGGAGAGGACTGCTATGGGT
CTTCACGTTCTCGACATCGGAGACGGTCACGAGAGAGGGCGCCGTACCGTACCCGCAAGCATGCCCACCA
CTGTCACAAACGCCGTACCAGGTCTTGTAGCAGTGCTTCCTCGAGAAGCCAACAGAGCAGTAAGCGCAGC
AGCCGGAGTGTGGAAGATGACAAGGAGGGCCACCTGGTGTGCCGGATCGGCGATTGGCTCCAAGAGCGAT
ATGAGATCGTGGGGAACCTGGGTGAAGGCACCTTTGGCAAGGTGGTGGAGTGCTTGGACCATGCCAGAGG
GAAGTCACAGGTTGCCCTGAAGATCATCCGTAATGTGGGCAAGTATCGGGAAGCTGCTCGTCTAGAAATT
AATGTTCTCAAGAAAATCAAGGAGAAAGACAAGGAAAATAAGTTCCTTTGTGTCCTGATGTCTGACTGGT
TCAACTTCCATGGTCATATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTTGAGTTCCTGAAGGA
GAACAACTTCCAGCCTTACCCCCTACCACATGTCCGGCACATGGCCTACCAGCTCTGTCATGCCCTTAGA
TTTCTACACGAGAACCAGCTGACCCACACAGACTTGAAGCCAGAGAACATCTTGTTTGTGAATTCTGAGT
TTGAAACCCTCTACAATGAGCACAAGAGCTGCGAGGAGAAGTCAGTGAAGAACACCAGCATCCGAGTGGC
AGACTTTGGCAGTGCCACGTTTGACCATGAACATCACACCACCATTGTGGCCACCCGTCACTACCGCCCA
CCTGAGGTGATCCTTGAGCTGGGCTGGGCACAGCCCTGTGATGTCTGGAGTATCGGCTGCATTCTCTTTG
AGTACTACCGTGGCTTTACACTCTTCCAGACCCATGAAAATAGAGAACACTTGGTTATGATGGAGAAGAT
TCTAGGACCCATCCCATCACACATGATCCACCGTACCAGGAAGCAGAAATATTTCTACAAAGGGGGCCTG
GTTTGGGATGAGAACAGCTCTGATGGGCGGTATGTGAAGGAGAACTGCAAACCTCTGAAGAGTTACATGC
TGCAGGACTCCCTGGAGCATGTGCAGCTGTTTGACCTGATGAGGAGGATGTTAGAGTTCGACCCTGCTCA
GCGCATCACATTGGCAGAAGCCTTGCTGCACCCCTTCTTTGCTGGCCTGACCCCTGAGGAGCGGTCCTTC
CACAGCAGCCGTAACCCCAGCAGATGA

Translation (638 aa):
MPVLSARRKRLASTAGPRRGSGPSLAVRWVPPLGPEPSSDRGRAPMRPRGPTCSTTRRGAGRGPRLLPGP
PGRDLHRCRPDPGGAGQSPRVCEFGARAVRPLGRVEPGPPTAASREGAVLPRAEARAGSGRGARSGEWGL
AAAGAWETMHHCKRYRSPEPDPYLSYRWKRRRSYSREHEGRLRYPSRREPPPRRSRSRSHDRIPYQRRYR
EHRDSDTYRCEERSPSFGEDCYGSSRSRHRRRSRERAPYRTRKHAHHCHKRRTRSCSSASSRSQQSSKRS
SRSVEDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEI
NVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALR
FLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRP
PEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGL
VWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLTPEERSF
HSSRNPSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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