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Report for CCDS22081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22081.1 Public Mus musculus 8 Snapc2 23 108 98 CCDS HistoryNCBI Gene:102209Re-query CCDS DB by CCDS ID:22081.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011981.4 ENSMUSP00000011981.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011981.4Link to Ensembl Protein Viewer:ENSMUSP00000011981.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000011981Re-query CCDS DB by Protein ID:ENSMUSP00000011981
Original member Current member NCBI NM_133968.1 NP_598729.1 Accepted alive Link to Nucleotide Sequence:NM_133968.1Link to Protein Sequence:NP_598729.1Re-query CCDS DB by Nucleotide ID:NM_133968Re-query CCDS DB by Protein ID:NP_598729Link to BLAST:NP_598729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598729.1 359 Q91XA5 359 100% 0 0

Chromosomal Locations for CCDS 22081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 4253122 4253304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4254282 4254401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4254551 4254619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4254992 4255373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4255481 4255806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGAAGCCACCGCAGAGACGGCGGAGGGTCCCAGCACGCTACGTAGGTGAAGCTACGGGCCCCACCGCTT
GG
AGCCCCCGCGAGATGCGGCATCTACTGAGACTACTTCAGGCTCGGCGGGGCCAGCCGGAGCCAGACGC
C
GCGGAGCTGGCCCAGGAGCTGCGAGGCCGCAGCGAGGCCGAGATCTGTCGCTTTATCCAGCAGCTCAAG
GGC
CGGGTGGTTCGAGAGGCCATTCAGAAGATGCAGCCAGGTGGCAGAGAGGGGCCAAGGCATCAAGGAA
CA
CCGCTCCCAGCCCCGGTAGAGGTATGGATGGATCTTGCTGAGAAACTAACAGGCCCAATGGAGGAAGC
C
CTGACTGCAGCTTTCTCCCAGGTGCTCACCATTGCTGCTGCAGAACCCCTCAGCCTCCTGCACTCCAGG
CCA
GGCAAGCCCACAAAGGCCCGTGGAAAGGCACTGGTGTTCTTGAGCAACCAAGATGGGCAGAAGGATC
CT
GCATCTGAAGGTTCTGGGCCTGTCCCCATGACTGCTGCTGACCCTACTCGTGAGGCTTCTGTCTCTGA
C
CCTAAGGCCTCTGGAGCCAACCCTGAGACCTCTGGCCTTGCCTCAGAGGTCACTGTCCCTGACCCTGAT
GCC
CCAACCAAGTCCCTGGCTGGATCCTCCACAGAGAGAGACCTTGCTGTGGACTTTGAGAAGATCTACA
AA
TACCTTTCCTTCTCCTCCAGAGGTGGCCATGGCCCTGAGCTCTCAGCAGCTGAGTCAGCTGTGGTCCT
T
AACCTGCTCATGGCACTTCCAGAGGAACTGTCCCACCTGCCTTGCACGGCCCTGCTGGAACATATGACC
AAA
ACATATGCTCAACTGATGGCTCCCCAGACCGCTCTCCCTGGAGAGAAGAGGCCCAGGCCTGGGACTG
AA
GATGGAGGGACTGGCTCCACAGGGCCAGAGGAGCCTGACCAAGCTAGTCCTCAAGCTTCTGAGCCCAT
A
GAGCCGAGGCTGGCCTGGAAAGCAGTTGGGATCTGCCCACTGAACCCGTTCCTGGTACCCCTGGGCCTC
GTG
AGCCAGGCCCCCAGCCCTTCGAGGTGA


Translation (359 aa):
MKPPQRRRRVPARYVGEATGPTAWSPREMRHLLRLLQARRGQPEPDAAELAQELRGRSEAEICRFIQQLK
G
RVVREAIQKMQPGGREGPRHQGTPLPAPVE
VWMDLAEKLTGPMEEALTAAFSQVLTIAAAEPLSLLHSR
P
GKPTKARGKALVFLSNQDGQKDPASEGSGPVPMTAADPTREASVSDPKASGANPETSGLASEVTVPDPD
A
PTKSLAGSSTERDLAVDFEKIYKYLSFSSRGGHGPELSAA
ESAVVLNLLMALPEELSHLPCTALLEHMT
K
TYAQLMAPQTALPGEKRPRPGTEDGGTGSTGPEEPDQASPQASEPIEPRLAWKAVGICPLNPFLVPLGL
V
SQAPSPSR




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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