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Report for CCDS35653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35653.1 Public Mus musculus 1 Kcnj13 23 108 98 CCDS HistoryNCBI Gene:100040591Re-query CCDS DB by CCDS ID:35653.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113212.3 ENSMUSP00000108838.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113212.3Link to Ensembl Protein Viewer:ENSMUSP00000108838.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113212Re-query CCDS DB by Protein ID:ENSMUSP00000108838
Original member Current member NCBI NM_001110227.2 NP_001103697.1 Accepted alive Link to Nucleotide Sequence:NM_001110227.2Link to Protein Sequence:NP_001103697.1Re-query CCDS DB by Nucleotide ID:NM_001110227Re-query CCDS DB by Protein ID:NP_001103697Link to BLAST:NP_001103697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103697.1 360 P86046 360 100% 0 0

Chromosomal Locations for CCDS 35653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87386416 87387038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87388930 87389389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGACAGCAGTAATTGTAAAGTGAATGCTCCTCTCCTGAGTCAAAGACACCGGAGGATGGTCACAAAAG
ACGGCCACAGCACACTTCAGATGGATGGTGCTCAAAGGGGCCTTGTGTATCTCCGAGATGCATGGGGAAT
CCTAATGGACATGCGCTGGCGCTGGATGATGCTGGTCTTTTCTGCTTCTTTTGTTGTCCACTGGCTTGTC
TTTGCAGTCCTCTGGTATGCTGTAGCTGAGATGAATGGTGATCTGGAAATAGACCACGACGTCCCACCTG
AAAACCACACTATCTGTGTGAAGCACATCACCAGCTTCACAGCTGCATTCTCCTTCTCTCTGGAGACACA
ACTTACAATTGGTTATGGTACCATGTTTCCCAGTGGTGACTGTCCAAGTGCAATCGCCTTACTTGCCATA
CAAATGCTCCTAGGCCTCATGCTAGAGGCTTTTATCACAGGTGCCTTTGTGGCGAAGATTGCACGGCCAA
AAAATAGAGCTTTCTCAATTCGATTCACTGACTTAGCAGTTGTAGCTCACAAAGATGGCAAACCTAATCT
TATCTTCCAAGTGGCCAACACCCGGCCCAGCCCTCTGACCAACGTTCGTGTCTCTGCTGTACTCTATCAG
GAAAGAGAAAATGGTGAACTTTACCAGACCAGTGTGGACTTCCACCTTGATGGCATCAGTTCTGAGGAAT
GTCCATTCTTCATCTTCCCGCTAACCTATTACCATACTATCTCACCATCAAGTCCTCTAGCTACCCTGCT
CCAACATGAGACTCCTCCACACTTTGAATTAGTTGTGTTCCTCTCAGCAATGCAAGAAGGCACTGGGGAA
ATCTGCCAAAGGAGGACATCCTACCTGCCCTCTGAGATCATGTTACATCACCGATTTGCAGCTCTAATGA
CTCGAGGTTCCAAAGGTGAGTATCAAGTCAAGATGGAGAATTTTGACAAGACTGTTCCTGAACATCCAAC
ACCTGTGGTCTCTAAGAGTCCACACAGGACTGACCTAGATATTCATATCAATGGACAAAGCATTGACAAT
TTCCAGATTGCTGAAACAGGGCTGACAGAATAA

Translation (360 aa):
MDSSNCKVNAPLLSQRHRRMVTKDGHSTLQMDGAQRGLVYLRDAWGILMDMRWRWMMLVFSASFVVHWLV
FAVLWYAVAEMNGDLEIDHDVPPENHTICVKHITSFTAAFSFSLETQLTIGYGTMFPSGDCPSAIALLAI
QMLLGLMLEAFITGAFVAKIARPKNRAFSIRFTDLAVVAHKDGKPNLIFQVANTRPSPLTNVRVSAVLYQ
ERENGELYQTSVDFHLDGISSEECPFFIFPLTYYHTISPSSPLATLLQHETPPHFELVVFLSAMQEGTGE
ICQRRTSYLPSEIMLHHRFAALMTRGSKGEYQVKMENFDKTVPEHPTPVVSKSPHRTDLDIHINGQSIDN
FQIAETGLTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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