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Report for CCDS28111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28111.1 Public Mus musculus 16 Senp5 23 108 98 CCDS HistoryNCBI Gene:320213Re-query CCDS DB by CCDS ID:28111.1Re-query CCDS DB by GeneID:320213See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023457.12 ENSMUSP00000023457.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023457.12Link to Ensembl Protein Viewer:ENSMUSP00000023457.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023457Re-query CCDS DB by Protein ID:ENSMUSP00000023457
Original member Current member EBI ENSMUST00000231360.1 ENSMUSP00000156109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231360.1Link to Ensembl Protein Viewer:ENSMUSP00000156109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231360Re-query CCDS DB by Protein ID:ENSMUSP00000156109
Original member Current member NCBI NM_001357087.1 NP_001344016.1 Accepted alive Link to Nucleotide Sequence:NM_001357087.1Link to Protein Sequence:NP_001344016.1Re-query CCDS DB by Nucleotide ID:NM_001357087Re-query CCDS DB by Protein ID:NP_001344016Link to BLAST:NP_001344016.1
Original member Current member NCBI NM_177103.4 NP_796077.2 Accepted alive Link to Nucleotide Sequence:NM_177103.4Link to Protein Sequence:NP_796077.2Re-query CCDS DB by Nucleotide ID:NM_177103Re-query CCDS DB by Protein ID:NP_796077Link to BLAST:NP_796077.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344016.1 749 Q6NXL6 749 100% 0 0
NP_796077.2 749 Q6NXL6 749 100% 0 0

Chromosomal Locations for CCDS 28111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31963427 31963537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31964270 31964320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31965745 31965828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31968800 31968937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31977680 31977757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31983264 31983311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31983493 31983631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31983768 31983873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31988940 31990434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGAAAAAACAGAAGAAAATTCTATGGAAGAAAGGAATTCACTTAGCCTTTTCTGAGAAATGGAATGCTG
GG
TTTGGAAGCTTTAAGAAGTTCTACTTTCCCCAAAACTTGTGCTTTCTGAAAGCTAAGCTGGGAAGGCC
A
GTTGCTTGGCATCGGCAGGTGAAGCATTTCCAGTGTAATAAGGGTCTTCACATCCAGAAAACATGGATT
CAA
GATGTACCGTTTTGTTCAAAGACAAAGTCTGGACTGGCTACTCAAAATGTTAGTACTTTGTACCCCA
AA
GTGAAAAGAAAGGACAGTAAGCACTTCATTTCCTCCTCAAGGAGTCTCCTGAAACTCCAAGCAGATAA
A
TTACTGTCTTCAGCAAAGAGCTTGGACCATAAATACTGCAGAGAGAAAAGCCTTCTGAAGGCAGCTCCT
GGC
TTGTCAGCAAACACTGTTTTAGGTAGAGCCAATGGTCACGAACCTACCACAGACCCACAAGCTTCAG
AC
TTTCCCATGAAGTTCAGTGGGGAGAGCCAAAGTCCAGGTGACAGTGGCAAGACTGTGGTCTTGAACAA
A
CATAGAAAGCGAGTTTGTCATGGCTGCTACCAAGGGCTAGAGCACCACAGGAACAGGAGACCCCTGATT
CCA
AAGCAGTTCCAGCTTAACCAACACCGAAGAGTCAGAGCGTCTCTGATGATGTATGAGAAACTATCCA
TG
ATTAGATTTCGGTATAGGATTTTCAGATCCCAGCACTTCAGAACGAAAAGCAGAGTTTGCAAGCTAAG
A
AAGGCCCAGCGAAGTTGGGTACAGAAGGTCACTGGGGACCATCAAGAGAACCTTAGGGATAATAACACT
GAG
GGTGACAATTGCAATCCAGTCCCTTCCCTAGAACCTAAAGATCCTTGTCGGTGTCAGCCATACTTTC
CA
GACATGGACAGCAGTGCTGTGGGGAAGGGAAAAAACTGTCACGTGCCTGATGGTCACACTAAAGAAAA
C
CCTGTATTGGACAAGGAGCATGGTTTAGATGACACATTCCCTGACCAGCAGAATGGCTGTGTTGCATAC
AAT
TGGGACCAGTCATCCTCTTGTCCTAAGTGGGAATGTACAGAGCAAATTCATGAAATCCCTTTAATGG
AA
CATCCTTCTAGTGACAAGTTCTCTCCAGAAACTGAAAGAGCACTTATGGCGCTGGGTCAGGAAAGCGG
G
ACAAGTGCTGTCAGCGATGACAGAGAGAAACTGCCAGTGTCTGGAGCAGACAAATCTGTGAGTAGTGTA
GAC
GGGCCTGTGTCTGAGGAGCCTGCCCAGAATGAGAACTTCCAGATGGAGGAGGATGGGTCTCTGAAGC
AG
AGCATTCTTAGTTCTAAGCTGCTGGACCACCCTTACTGTAAAAGTCCACTGGATGCTCCCTTGCTGTG
C
AGTGAACCCAAAGTAGAAAACCAAATGTCAGGTGGCAAGAGCAGCCAGACAGCGTCTCCAGTGGATGAT
GAG
CAGCTCTCAACCTGCCTTTCTGGATTCCTAGATGAGGTTATGAAAAAGTATGGAAGTCTGGTCCCAC
TC
AGTGAAAAAGATGTCCTTGGGAGATTAAAAGATGTCTTTAATGAAGACTTTTCTAATAGAAAACCATT
C
ATCAATAGGGAAATAACAAACTACCGGGCCAGACATCAAAAGTGTAACTTCCGCATCTTCTACAATAAG
CAC
ATGCTGGATATGGACGATCTGGCAACTTTGGATGGGCAGAACTGGTTGAATGACCAGGTTATTAATA
TG
TATGGCGAGCTGATAATGGATGCAGTCCCAGACAAGGTCCACTTCTTCAACAGCTTTTTCCATAGACA
G
CTGGTAACCAAAGGCTATAATGGAGTTAAAAGATGGACGAAGAAGGTGGACTTGTTTAAAAAGAGTCTT
CTG
TTGATTCCCATCCACCTGGAGGTCCACTGGTCTCTCATTACTGTGACACTCTCCAGCCGGATTATTT
CA
TTTTATGATTCCCAAGGCATTCATTTTAAATTCTGTGTAGAGAATATAAGAAAGTATTTGCTGACTGA
A
GCCAGAGAAAAAAATAGACCTGAATTTCTTCAGGGTTGGCAGACTGCTGTTACAAAGTGTATTCCACAA
CAG
AAAAATGACAGTGACTGTGGAGTCTTTGTGCTCCAGTACTGCAAGTGCCTCGCCCTAGAGCAGCCTT
TC
CAGTTTTCTCAAGAAGACATGCCTCGTGTGCGGAAGAGGATCTATAAGGAGCTGTGTGAGTGCCGGCT
C
CTGGACTGA


Translation (749 aa):
MKKQKKILWKKGIHLAFSEKWNAGFGSFKKFYFPQNLCFLKAKLGRPVAWHRQVKHFQCNKGLHIQKTWI
Q
DVPFCSKTKSGLATQNVSTLYPKVKRKDSKHFISSSRSLLKLQADKLLSSAKSLDHKYCREKSLLKAAP
G
LSANTVLGRANGHEPTTDPQASDFPMKFSGESQSPGDSGKTVVLNKHRKRVCHGCYQGLEHHRNRRPLI
P
KQFQLNQHRRVRASLMMYEKLSMIRFRYRIFRSQHFRTKSRVCKLRKAQRSWVQKVTGDHQENLRDNNT
E
GDNCNPVPSLEPKDPCRCQPYFPDMDSSAVGKGKNCHVPDGHTKENPVLDKEHGLDDTFPDQQNGCVAY
N
WDQSSSCPKWECTEQIHEIPLMEHPSSDKFSPETERALMALGQESGTSAVSDDREKLPVSGADKSVSSV
D
GPVSEEPAQNENFQMEEDGSLKQSILSSKLLDHPYCKSPLDAPLLCSEPKVENQMSGGKSSQTASPVDD
E
QLSTCLS
GFLDEVMKKYGSLVPLSEKDVLGRLKDVFNEDFSNRKPFINREITNYRARHQKCNFRIFYNK
H
MLDMDDLATLDGQNWLNDQ
VINMYGELIMDAVPDKVHFFNSFFHRQLVTKGYNGVKRWTKKVDLFKKSL
L
LIPIHLEVHWSLITVTLSSRIISFYDSQGIHFKFCVE
NIRKYLLTEAREKNRPEFLQGWQTAVTKCIPQ
Q
KNDSDCGVFVLQ
YCKCLALEQPFQFSQEDMPRVRKRIYKELCECRLLD



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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