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Report for CCDS50310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50310.1 Public Mus musculus 18 Alpk2 23 108 98 CCDS HistoryNCBI Gene:225638Re-query CCDS DB by CCDS ID:50310.1Re-query CCDS DB by GeneID:225638See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035548.15 ENSMUSP00000048752.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035548.15Link to Ensembl Protein Viewer:ENSMUSP00000048752.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035548Re-query CCDS DB by Protein ID:ENSMUSP00000048752
Original member Current member NCBI NM_001037294.1 NP_001032371.1 Accepted alive Link to Nucleotide Sequence:NM_001037294.1Link to Protein Sequence:NP_001032371.1Re-query CCDS DB by Nucleotide ID:NM_001037294Re-query CCDS DB by Protein ID:NP_001032371Link to BLAST:NP_001032371.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032371.1 2144 Q91ZB0 2144 100% 0 0

Chromosomal Locations for CCDS 50310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65266071 65266290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65276646 65276694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65280878 65281095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65289678 65289766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65291256 65291530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65294080 65294115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65294212 65294339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65300014 65300161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65304450 65307813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65349028 65350708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65372721 65372838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65378016 65378124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6435 nt):
ATGACAGATCCAGGCTGCCCCGAGAGGCGCACGCTATGTTTCTTATCAACGTTACTTTCCCAGAAGGTTC
CG
GAGAAGTCTGACGTCGTGCTTCGATGCATGATAGCTGGTCAGCCCAAGCCAGAGGTGACTTGGTATAA
G
AATGGTCAAGCCATAGACTTGGGAGGCACTGTTTCCAGTTATGAGTTCTTTGAGAACCAGTATATTCAT
TTG
TTGCATCTCTCGTGCTGTACCCAGAGCGACGCCGCTGTTTACCAGGTCTCGGCAAGAAACTGCGTGG
GG
ATGATCTGCTGTTCAGCATCCCTCGAGGTCCAGTGTCTGCAGGACCCACAGGTCTCTCCTGATCCTGG
A
GGCGGCAGGGACGCGGCTGGCGAGTGTAAAACAGAGATACGTGAAGAAGACAGCATAAACCACACGGAT
GAG
AAATGGAATCCTTGTAAGAAAGGAGAAAGTACAGCTGATTCCTTCCTCGACAAATTCAACCATTTGA
GT
TCACCCCAGATAGTGGCTAGGGGTGACTCTGGTGCTTCCAATTCTGAGAATCCCCAATATATTAAAGA
G
ACGAGACAAAGGATGGGGCAGTACAATTCAAATAACATGCAAGAAAATTCTTTTAATTCAAATAACACT
GCT
GAAAAACAAGATGTATCCCAGCTCTGGACAGTGAATGCCACTGTGCCAGGGTTAGTTAGTGATGGCC
TA
GGATACGAAGAATCTAATGAGAGTGTCAGCCCTAGTCATCAAACCCCCAAAGTACAGAAATACATCAG
T
TTCAGTCTTCCATTGCCGGAGACAACCCTGGGTCCTTACCCAGAAGACAGCAACTCCATCAACATGCAG
CCG
GGACCCCAGGTTTCCAGCGAAGACTCTGACAGTGACTATGAACTTTGCCCAGAGATAACCCTAACCT
AC
ACGGAGGAGTTTTCGGATGATGACCTGGAGTATCTGGAATGTTCCGATGTTATGACGGATTACTCTAA
T
GCGGTCTGGCAAAGGAGCCTGCAAGGGACTGACCGAGTTTTTTTATTAGAAAGCGATGACGAAGAGATG
GAA
TTCAATGAGTGTGGTCTGGGTGGGTGTGAGCATTTCTTCACTGAAATGGGTTGTGGGCCTCAGGTGT
CG
GGTGGCATGTGGTCTATGAATGTTGCCACTGGCTTCTGTAGTTATCACTCACAACCTCAGGAAGTGAG
G
GTTAGGAGCAGCGGAACCTCAGGGCATAGCCCGTTACCCCTGCATTCAGAAATGACTCTTACCCTGGGA
CCT
CACCAGGATGAAACAGCTAAGATGACAGAACCGGGGAGGGCTCCACTCCCTACTGCTCCCGAGGCTG
TT
GAAAATGATTGTTCAGGAATTCGGGGAGAAACCAGAGACAACCCTGAAGCAGGAGAGGAATTCTCCGG
T
GACAATCTACAGACTATGGATAAGGTAGAGACAGAGGCATCAGTGAAGCCCTTGTCTGGGGGCTCAGAT
AAG
ACAGAGGTGAAGCAGGGTTTGGAAAGCCTGGCTCGGGAACGCACAGACGAAAAGTACCCAGGCAGCA
AG
AAGGCAGCCCTGAGACCCACCAGGGCGAGGCGGCCCGGAATGAAGGCAAACACCAAGAAGCAGCTGTT
G
AGAGACAGTGCCCCCAAAGGCACTCTAGATCTCCTCCCCAAAGAACCGACTAGGCAACCCTTACCCGGG
AGC
TATGGACAAGAGCCCACACACACGGAAGCAGGAGCTCCTGGCTGGGATTCCCACTTCCACGCAGAAG
TG
TGTATTCCACTTCCTGCAGAGCAAGACTCCAAAATCCTTCGACCACCAGCAGACCCACTTTCCAAGGA
A
GAGGACAGCAGCTTCGAGGGAGGTGGGGCACTGCTTAATAAATTATTTGAAGCAAGCCAGATTCCAGAC
CGG
ACTGACCATCTTCAGATGCAAATTCAGGAAACCATTGGGGAGAGCAGTTCTCTCGACCAGATGTTGG
CC
TTTTCAGTGCCTGCTGAGGAGTCATCTACATTTGCTGGGGCCACAACACATTCTGTCTCCAACTTGAG
T
GAGATCAACAGGGAAAATCTGTCATTGGCCCAATACCCAGGACTGGAAAGCTGTCCTCAAAGCCTCCAG
CAG
GAAGGCAGACCAAACAGAGACAGAGACTTGCCTGGTGCTCTCTGGGCAGAATCAGCCTGTGAACTGA
GT
CTCCTAGAAGACAATGAGGAAGAAGAGTCGCAGCCTCCAGCCTCAGTGGCTCTCCCTCAGGGTGATGG
T
GTCCCCTGCAGGGAGCCAGAGGGTCTCTCTGATTCTTTCCCCCAGCCCACTGCTCCCTCCCTCCCCCTG
GAA
AATGTGGGCAGTGGGTCAAGGGTCAGAGAAGCTGCAGGTGGGGTGGGGTGTTTTGAAGCCGGTGACC
AA
GAAACATGTTATGCTACCATGGATCTCCTTGTTGGAGCACCAGTTGATAAATATTTGCCTCAAGAAAT
T
TGCCCCGAGGACTTGGAGCTGACAGAAGGTCAAAGCGAAGTGTGTGATTTATGTTCTCCTGACAAGATA
CTG
GCTGTTCTACAGACACAAGGTTCTGAGCCTCCACGGTCCACAGACAAGCGCAGCCAGGATGGCAAGT
CA
GCCGAGGGCCTTCTTTTTAACAGTACCTTCACCTGGGACACGGCAAAGGAGGCCAGTGAAGATGCTGT
G
GGAGAGACAGCAGCTGATGTGGAGAATCCTCCCTCCACCTTCTCTTCTACGCTACCCTACAGTGAAAGA
GGG
TTTGGGGAGACACAACCCCTTTGTTCTGAGACTATCTCCTTTGTAAAGGATAGTGAAGGGAGCTACA
GA
AGTTCCAGTCTCAGCATCCCAGCTGCCATAGACACACTTGCCAGCTACAGTTCTGACAGGGAGTGCTC
A
AAAGAGCAGTCAGCCGAATCAACTGCTAATGTCGACTGTCATCAGGTGACCAGGGAGATGGAGGGCATA
TCA
ACTAATGCCGCTGAGGTCCACGAAATCAAATGCCACTCCGTTTCTGTCCCCCAGGACAATGACTTTG
AT
GTTGGTGCTGACCAGGTCTCGTGTGAGGCACGAGATGAAGATAATTCCCAATCTCTTCCAGACGACGA
C
TCACAGTCAGGTCGTTCATTAAGTAGCTCCACAGGTGAAGCAACCGGGGAGACTCTGGTGCCAGCACCC
AGC
AGTGCAGGAGATCATGGCCACTTCTCCATGCCCGAGGGACAGGGTTTGTGTAGCAGGGCTCTTCAGA
TG
GATAACCAGCCTGTGTGTCAGAGCCAGGCTATGGAGGGAGCCCACAGCAGAGGCCTTGAGGAGCACTT
C
CAAGAAAAGGGAAGTGGAATGAAGCATGGCATCCGGCCACAGAGCACATCCCACCAGGTTTCTCTTTCT
GCA
AATGACTTCCAAGAAATTTTGCCCTCCATACCCACCATGCAACAGGAGACCAATGTGGAACCCTTGG
AG
CACTCCCTAGCAGATTCCAGGGAAGAAATTGAGTGTAGCTCAGACCCGAGGACCAGTGACTTGGTGGT
G
GCTGAGAAGACTGTGGGAGAAGACAGTCATTTGGTAGTCAGTGTCCCAGCTCTCCCTGACATCCTCCTT
GGA
GAGAAAGATGACGTTGGGCTAGGAAGTTGGGCTGTGGGCGGCAAAGTGAAGATCATAACTCTAGAAG
CT
CCCGTCTTTGAAATCTGGCCACCAGAACTAGTGAGGCACCCTGGGTACAAGGAGGCAGAAGCTGGTCT
C
ACCATGCCTGGTAGGAGCTGGGCTCTGTCTGACATCCTCAGAGCAGGTGCCACCAGATCTGAGCCAGGT
GCC
TTGGGAGGAGCAGCATGGGTTCCCAGCCCCCAGGCTGATGCTCTCATGGCCCTTGGAGCGAACAGGG
AC
ACCTGGCTAGGTGCTGCACCAGACAGACAAGCAAACTGCAATTGTCTGTCTTCCCAGTGTCTGAGTCA
A
CCCCGATTCCTGGAGTCATCTGTAGACCCTGTTGAGGACAAGGAGTTAGAGGTCACGGACTCTCCATCA
GAG
GTTTCCAAAACTGGAGAGATGGAAATGCCTGAGACTCTGAATGAGGAACAGGAGGAAACCCAGCAGA
TA
CTGCGTCACCCCGCCGTTGTTAACCAGTCGGTGAACTTCCCTAGGATCCTGGAATCCTCTGTGGACCC
C
ATTGACGACAGGGGTGAGCTGGAGGGTGTCTGGCCCGAGAAGCCAGAGCCCTCTGACTCCAGCGTAGAA
GGA
AACGAATTCATTGTTGGAAACACGTGTCAGAGGGTAGACATCCAACCTGCTAGCCTACAGCTCCCAC
AT
CCCCAGGACAGCGGGGAAATCATTCCATATGAACACACAACCAACCAAAATCGCGTAGATGGAGAGAG
A
GCAGAAGCCAAAACCAGTCTGCCGGATAAAGCCAAAGCGGAAGCAGAAGCTGTTGTTTGGCAGGCCCAG
GGG
CCTGGTGAAGAGGGACAAGGAATTCCAAGTGTATGCAGCATGAGCCAAACACAAGATGGTGGTGACA
GA
AGCCTAGGAGAAGCTGGGCAAAGGGGAACGGATGAGACCGAGGTCATTTCCCCCCTGTCTCCTCTTTC
T
AGCTGTCTCACAGGAGTGACACATACATGTGTCAAGGCTGAAACCAACAACTCCACAGGCCACATTTAT
GGC
GGATCTGAGCCCAGAACCCGTCAAAGTGTAATTCCTATGAAGACAGAAAAGGGAACTATCGAGAGCA
AG
TGTGGGAACCATGTGCGCTCTTCAGATGATCTCACAAACACACCTTGTACTTCATCTCCCAAAGGAAA
T
GTCACACGCTTGTCAATAAGCCATGGCCTGGAGGAACTGAAATCAGAGAAGCTGCAGATTGCGGAAACC
AAA
CCCCTAAACTCATCTGACTCCCCAACAATGACCTTAGCTCTCATTTCAGGAGAATGTGAGTCAGAGA
AA
GACCCCAAAAGCTTGTTACGTAGGGACCCATGTCCAAAGGGCTCCACCCTGGATAGCGGGAAGAAGTC
C
AGAGACCAACAGCAGAAGCCTGTGGCAGCCCAGGTCAGCAAGGCACCTGGGGACCAATCAGCAATGGCT
GGG
TCAGAGGAGGGCAAGAAGAAGCAAGAGGCTTCGGGGAGTGGACACTTGACTGCAGGGATAAAGAAGA
AA
ATTCTATCCAGGGTCGCAGCCCTGAGACTGAGGCTGGAGGAAAAGGAAAATTCGAGGAAGAACTCCAT
C
GTGAAGAAGACACCTAAGTTTGAAAGGTCCTTATCCCGCACTGATGAGAAAAGAGACCCCAAAAGGGCC
CCT
TGCAAAGCTGAAGGGAAAGCTCCAGTATTGCTGAAGAGGATCCAGGCCGAGATGGCTCCCGAGCACT
CC
GGAAATATAAAGTTGAGCTGCCAGTTTTCAGAAATCCATGAAGACTCTACCGTCTGCTGGACAAAAGA
T
TCCAAGTCGATAGCCCAGGCCAAGAAAAGCGCAGGGGACAACTCCAGTGTTTCCTTGGCCATCGTCCAA
GCT
GGTCAGAAGGACCAGGGCCTGTATTACTGCTGCCTCAAGAACAGTTATGGAAAAGTCACTGCTGAGT
TT
AACCTCACAGCTGAAGTTCTCAAACAGCTTTCAAGTCACACAGAATATAGAGGATGTGAAGAGATTGA
A
TTCAGCCAGCTCATCTTCAAAGAAGATGTTTTCAATGACAGCTACTTCGGGGACCACCTACGTGGCCAG
ATC
TCCACGGAGGAGCTTCACTTTGGCGAAGGGGTGCACCGCAAAGCTTTCCGGAGCAAGGTGATGCAGG
GC
CTCATGCCGGTCTTCCAGCCCGGCCACGCATGCGTACTCAAGGTGCACAATGCCGTCGCCCATGGGAC
C
AGAAACAATGACGAACTTGTGCAGAGGAACTACAAACTGGCTGCCCAGGAATGCTACGTCCAGAATACT
GCC
AGATACTACGCCAAGATCTACGCCGCTGAAGCACAGCCTCTGGAAGGCTTCGGAGAGGTGCCGGAGA
TC
ATTCCTATTTTCCTTATCCATCGGCCCGAGAACAACATCCCATATGCCACAGTGGAAGAAGAGCTGAT
T
GGAGAATTCGTGAAGTATTCCATCCGGGACGGGAAGGAAATCAACTTCCTCAGACGAGATTCAGAGGCT
GGC
CAGAAATGTTGCACCTTCCAGCACTGGGTATACCAGAAAACAAGTGGCTGTCTCCTGGTCACGGACA
TG
CAGGGTGTGGGAATGAAGTTAACTGACGTTGGCATAGCAACACTAGCTAGAGGGTACAAAGGATTTAA
G
GGCAACTGTTCCATGACCTTCATTGATCAGTTCAGAGCGCTGCATCAGTGTAACAAGTACTGTAAAATG
CTG
GGGCTGAAATCCCTTCAAAACAACAGCCAGAAACCCAAGAAGCCCATCGTCGGGAAAGGCAGGGTTC
CG
ACAAACGCCACGCAGGTGAAGACGCCTGAGTCTGAGACGCCGCCCGCAGAAAGAAAAACCTAG


Translation (2144 aa):
MTDPGCPERRTLCFLSTLLSQKVPEKSDVVLRCMIAGQPKPEVTWYKNGQAIDLGGTVSSYEFFENQYIH
L
LHLS
CCTQSDAAVYQVSARNCVGMICCSASLEVQCLQDPQVSPDPGGGRDAAGECKTEIREEDSINHTD
E
KWNPCKKGESTADSFLDKFNHLSSPQIVARGDSGASNSENPQYIKETRQRMGQYNSNNMQENSFNSNNT
A
EKQDVSQLWTVNATVPGLVSDGLGYEESNESVSPSHQTPKVQKYISFSLPLPETTLGPYPEDSNSINMQ
P
GPQVSSEDSDSDYELCPEITLTYTEEFSDDDLEYLECSDVMTDYSNAVWQRSLQGTDRVFLLESDDEEM
E
FNECGLGGCEHFFTEMGCGPQVSGGMWSMNVATGFCSYHSQPQEVRVRSSGTSGHSPLPLHSEMTLTLG
P
HQDETAKMTEPGRAPLPTAPEAVENDCSGIRGETRDNPEAGEEFSGDNLQTMDKVETEASVKPLSGGSD
K
TEVKQGLESLARERTDEKYPGSKKAALRPTRARRPGMKANTKKQLLRDSAPKGTLDLLPKEPTRQPLPG
S
YGQEPTHTEAGAPGWDSHFHAEVCIPLPAEQDSKILRPPADPLSKEEDSSFEGGGALLNKLFEASQIPD
R
TDHLQ
MQIQETIGESSSLDQMLAFSVPAEESSTFAGATTHSVSNLSEINRENLSLAQYPGLESCPQSLQ
Q
EGRPNRDRDLPGALWAESACELSLLEDNEEEESQPPASVALPQGDGVPCREPEGLSDSFPQPTAPSLPL
E
NVGSGSRVREAAGGVGCFEAGDQETCYATMDLLVGAPVDKYLPQEICPEDLELTEGQSEVCDLCSPDKI
L
AVLQTQGSEPPRSTDKRSQDGKSAEGLLFNSTFTWDTAKEASEDAVGETAADVENPPSTFSSTLPYSER
G
FGETQPLCSETISFVKDSEGSYRSSSLSIPAAIDTLASYSSDRECSKEQSAESTANVDCHQVTREMEGI
S
TNAAEVHEIKCHSVSVPQDNDFDVGADQVSCEARDEDNSQSLPDDDSQSGRSLSSSTGEATGETLVPAP
S
SAGDHGHFSMPEGQGLCSRALQMDNQPVCQSQAMEGAHSRGLEEHFQEKGSGMKHGIRPQSTSHQVSLS
A
NDFQEILPSIPTMQQETNVEPLEHSLADSREEIECSSDPRTSDLVVAEKTVGEDSHLVVSVPALPDILL
G
EKDDVGLGSWAVGGKVKIITLEAPVFEIWPPELVRHPGYKEAEAGLTMPGRSWALSDILRAGATRSEPG
A
LGGAAWVPSPQADALMALGANRDTWLGAAPDRQANCNCLSSQCLSQPRFLESSVDPVEDKELEVTDSPS
E
VSKTGEMEMPETLNEEQEETQQILRHPAVVNQSVNFPRILESSVDPIDDRGELEGVWPEKPEPSDSSVE
G
NEFIVGNTCQRVDIQPASLQLPHPQDSGEIIPYEHTTNQNRVDGERAEAKTSLPDKAKAEAEAVVWQAQ
G
PGEEGQGIPSVCSMSQTQDGGDRSLGEAGQRGTDETEVISPLSPLSSCLTGVTHTCVKAETNNSTGHIY
G
GSEPRTRQSVIPMKTEKGTIESKCGNHVRSSDDLTNTPCTSSPKGNVTRLSISHGLEELKSEKLQIAET
K
PLNSSDSPTMTLALISGECESEKDPKSLLRRDPCPKGSTLDSGKKSRDQQQKPVAAQVSKAPGDQSAMA
G
SEEGKKKQEASGSGHLTAGIKKKILSRVAALRLRLEEKENSRKNSIVKKTPKFERSLSRTDEKRDPKRA
P
CKAEGK
APVLLKRIQAEMAPEHSGNIKLSCQFSEIHEDSTVCWTKDSKSIAQAKKSAGDNSSVSLAIVQ
A
GQKDQGLYYCCLKNSYGKVTAEFNLTAE
VLKQLSSHTEYRGCEEIEFSQLIFKEDVFNDSYFGDHLRGQ
I
STEELHFGEGVHRKAFRSKVMQGLMPVFQPGHACVLKVHNAVAHGTRNNDELVQRNYKLAAQ
ECYVQNT
A
RYYAKIYAAEAQPLEGFGEVP
EIIPIFLIHRPENNIPYATVEEELIGEFVKYSIRDGKEINFLRRDSEA
G
QKCCTFQHWVYQKTSGCLLVTDMQ
GVGMKLTDVGIATLARGYKGFKGNCSMTFIDQFRALHQCNKYCKM
L
GLKSLQNNSQKPKKPIVGKGRVPTNATQVKTPESETPPAERKT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser