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Report for CCDS38035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38035.1 Public Mus musculus 19 Eif3a 23 108 98 CCDS HistoryNCBI Gene:13669Re-query CCDS DB by CCDS ID:38035.1Re-query CCDS DB by GeneID:13669See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38035.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025955.7 ENSMUSP00000025955.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025955.7Link to Ensembl Protein Viewer:ENSMUSP00000025955.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025955Re-query CCDS DB by Protein ID:ENSMUSP00000025955
Original member Current member NCBI NM_010123.3 NP_034253.3 Accepted alive Link to Nucleotide Sequence:NM_010123.3Link to Protein Sequence:NP_034253.3Re-query CCDS DB by Nucleotide ID:NM_010123Re-query CCDS DB by Protein ID:NP_034253Link to BLAST:NP_034253.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034253.3 1344 P23116 1344 100% 0 0

Chromosomal Locations for CCDS 38035.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 60762081 60762304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60763065 60763264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60764032 60764233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60766334 60766995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60767575 60767663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60768708 60768892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60769866 60770019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60771015 60771137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60771644 60771757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60772093 60772197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60772692 60773039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60773507 60773692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60773901 60774017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60775293 60775391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60775751 60775855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60776626 60776797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60777939 60778147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60779358 60779557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60781354 60781517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60781885 60782021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60782168 60782358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60790469 60790517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4035 nt):
ATGCCGGCCTATTTCCAGAGGCCGGAAAATGCCCTCAAGCGCGCCAACGAATTTCTTGAGGTTGGCAAAA
AG
CAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACA
T
GAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGG
TTA
TATCAATATAAGAACATATGCCAACAGGTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATT
TG
AAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGA
T
CTGGATAATATTCAGACTCCTGAGAGTGTTCTCTTAAGTGCAGTAAGTGGGGAAGATACTCAGGATCGT
ACT
GACAGATTGCTACTGACTCCCTGGGTCAAGTTCCTGTGGGAATCATACAGGCAGTGTTTGGACCTTC
TT
CGAAACAATTCTAGAGTAGAGCGCCTTTACCATGATATCGCCCAACAAGCTTTCAAATTCTGCCTCCA
G
TATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGC
CAC
CATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGAC
TT
GTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAGGAAGCCTTCAAAGCTGTGGAAGATATTCA
T
GGACTATTTTCCTTGTCTAAGAAACCACCTAAGCCTCAGTTGATGGCAAATTACTATAACAAAGTTTCA
ACA
GTGTTTTGGAAATCTGGAAATGCTTTGTTCCATGCATCTACACTTCATCGTCTTTATCATCTGTCTA
GA
GAAATGAGAAAGAATCTTACACAAGAAGAGATGCAAAGAATGTCTACTAGAGTCCTTTTGGCGACTCT
T
TCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAG
AAG
CAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATA
TG
GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGA
A
TTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAGGTATTAAATTGGGTTAGGGAACAACCTGAAAAA
GAA
CCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAGGTGG
CA
CAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACT
G
GAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGGTACGTATTGACCATACTTCCCGGACT
CTG
AGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCA
TG
CCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCAT
C
AGACCTGCTCACATTCTGCAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAAT
TCA
AGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGA
GT
CTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGC
T
GAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAA
ATC
AAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTA
AA
GATATTGACATTGAAGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACT
G
GAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAGATTGACTATTTTGAGAGA
GCT
AAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACC
TG
TGGGAACAGCAAGAAGAAGAAAGAATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAA
G
AATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCT
GTC
TACGAGGAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATC
GG
AAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAG
G
GCAGAGGAGCAGATGCTCAAAGAGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAA
CTT
AGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGG
AA
ATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAGGA
C
TCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGA
AGA
GGCCCACCAGAAAAGGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGG
AT
CGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTAT
C
CCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGA
GGA
ACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATG
AT
GACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGG
A
AGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGA
GGA
GGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGG
AT
GATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAG
G
ATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGA
AGG
GGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAGGTGGATGGAGAGAGAAAGAAA
AG
GCTAGAGAAGAGAGTTGGGGTCCACCTCGAGAATCAAGACCATCAGAAGAACGTGAATGGGATAGAGA
C
AAAGAGAAGGACAGAGATAATCAAGATCGAGAGGAGAATGACAAAGACCTTGAACGAGATAGGGACAGA
GAG
AGAGATGGGGACCGGGAGGATCGATTCAGAAGACCCAGGGATGAAGGTGGCTGGAGAAGAGGACCAG
CA
GAAGAATCTTCAAGCTGGAGAGATTCAAGTCGCCGTGATGATAGGGACAGGGAAGACCGTCGACGGGA
T
AGAGATGATCGTCGTGATCTGAGAGACCTGAGAGACAGAAGGGATTTAAGAGATGATAGAGATCGGAGA
GGA
CCTCCCCTCAGATCAGAGCGAGAAGAAGCAAGCTCTTGGAGACGCACTGATGACAGGAAAGATGACC
GG
ACTGAAGAGAGGGATCCACCTCGTCGTGTTCCTCCCCCAGCTCTTTCAAGAGATCGAGAAAGAGAGCG
A
GAACGAGAAGGTGAGAAAGAGAAAGCATCCTGGAGAGCTGAGAAAGATAGGGAGTCCCTTCGTCGTACT
AAG
AATGAAACTGATGAAGATGGATGGACCACAGTACGACGTTAA


Translation (1344 aa):
MPAYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLRKSHLAKEG
L
YQYKNICQQ
VNIKSLEDVVRAYLKLAEEKTEAAKEESQQMVLDIEDLDNIQTPESVLLSAVSGEDTQDR
T
DRLLLTPWVKFLWESYRQCLDLLRNNSRVERLYHDIAQQ
AFKFCLQYTRKAEFRKLCDNLRMHLSQIQR
H
HNQSTAINLNNPESQSMHLETRLVQLDSAISMELWQ
EAFKAVEDIHGLFSLSKKPPKPQLMANYYNKVS
T
VFWKSGNALFHASTLHRLYHLSREMRKNLTQEEMQ
RMSTRVLLATLSIPITPERTDIARLLDMDGIIVE
K
QRRLATLLGLQAPPTRIGLINDM
VRFSVLQYVVPEVKDLYNWLEVEFNPLKLCERVTKVLNWVREQPEK
E
PELQQYVPQLQNNTILRLLQQ
VAQIYQSIEFSRLTSLVPFVDAFQLERAIVDAARHCDLQVRIDHTSRT
L
SFGSDLNYATREDAPVGPHLQSMPSEQIRNQLTAMSSVLAKALEVIRPAHIL
QEKEEQHQLAVNAYLKN
S
RKEHQRILARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQ
I
KKKTVRERLEQIKKTELGAKAFKDIDIE
DLEELDPDFIMAKQVEQLEKEKKELQERLKNQEKKIDYFER
A
KRLEEIPLIKSAYEEQRVKDMDLWEQQEEER
ITTMQLEREKALEHKNRMSRMLEDRDLFVMRLKAARQS
V
YE
EKLKQFEERLAEERHSRLEDRKRQRKEERKITYYREKEEEEQRRAEEQMLKEREERERAERAKREEE
L
REYQERVKKLEEVERKKRQRELEIEERERRREEERRLGDDPLSRK
DSRWGDRDSEGTWRKGPEADSEWR
R
GPPE
KEWRRETRDDERPHRRDEDRLRRLGGDDEERESSLRPDDDRIPRRGLDDDRGPRRGPDEDRFSRR
G
TDDDRPSWRNADDDRPPRRIGDDDRGSWRHTDDDRPPRRGLDDERGSWRTADEDRGPRRGMDDDRGPRR
G
GADDERSSWRNADDDRGPRRGMDDDRGPRRGLDDDRGPWRNAAEDRISRRGADDDRGPWRNMDDDRVPR
R
GDDARPGPWRPFVKP
GGWREKEKAREESWGPPRESRPSEEREWDRDKEKDRDNQDREENDKDLERDRDR
E
RDGDREDRFRRP
RDEGGWRRGPAEESSSWRDSSRRDDRDREDRRRDRDDRRDLRDLRDRRDLRDDRDRR
G
PPLRSEREE
ASSWRRTDDRKDDRTEERDPPRRVPPPALSRDREREREREGEKEKASWRAEKDRESLRRT
K
NETDEDGWTTVRR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser