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Report for CCDS24124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24124.1 Public Mus musculus 10 Elk3 23 108 98 CCDS HistoryNCBI Gene:13713Re-query CCDS DB by CCDS ID:24124.1Re-query CCDS DB by GeneID:13713See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008542.11 ENSMUSP00000008542.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008542.11Link to Ensembl Protein Viewer:ENSMUSP00000008542.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000008542Re-query CCDS DB by Protein ID:ENSMUSP00000008542
Original member Current member NCBI NM_013508.2 NP_038536.2 Accepted alive Link to Nucleotide Sequence:NM_013508.2Link to Protein Sequence:NP_038536.2Re-query CCDS DB by Nucleotide ID:NM_013508Re-query CCDS DB by Protein ID:NP_038536Link to BLAST:NP_038536.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038536.2 409 P41971 409 100% 0 0

Chromosomal Locations for CCDS 24124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93250010 93250108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93254689 93254811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93264880 93265680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93284769 93284975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGAGAGTGCAATCACGCTGTGGCAGTTCCTCTTGCACTTGCTGCTGGACCAGAAACATGAGCACCTCA
TC
TGCTGGACATCGAACGATGGCGAGTTCAAGCTCCTCAAGGCGGAAGAAGTGGCCAAGCTGTGGGGCCT
C
CGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCGCTGAGATACTATTACGACAAGAAC
ATC
ATCAAGAAAGTGATCGGGCAGAAGTTTGTGTACAAGTTCGTCTCTTTCCCGGATATCCTGAAAATGG
AT
CCTCACGCGGTAGAGATCAGCCGGGAGAGCCTCCTGCTGCAGGACGGCGACTGTAAGGTGTCCCCGGA
A
GGCCGAGAGGTCCACAGGCACGGCTTGTCCTCTCTCAAAAGTGCCAGCCGCAACGAGTACCTCCACTCG
GGC
CTCTACTCGTCCTTCACCATCAACTCCCTGCAGAACGCTCCAGAGGCCTTCAAGGCCATCAAGACGG
AG
AAGCTGGAGGAGCCCTGTGATGACAGTCCCCCTGTGGAAGAAGTCAGGACTGTGATCAGGTTTGTGAC
C
AATAAAACCGACAAGCACATCACCAGGCCTGTGGTGTCCCTGCCTTCCACATCCGAGACCGCTGCGGCA
GCG
GCATCCGCTTTCCTGGCCTCGTCTGTCTCAGCCAAGATCTCCTCTTTAATGTTGCCAAATGCTGCCA
GC
ATTTCGTCTGCGTCACCCTCTTCATCTCGGTCCCCATCCCTGTCCCCCGACTCTCCCCTCCCTTCTGA
A
CACAGAAGCCTCTTCCTGGAGGCAGCCTGCCATGACTCGGATTCTCTGGAGCCCCTGAATCTGTCATCG
GGC
TCCAAAACCAAGTCTCCATCTCTTCCCCCAAAAGGCAAAAAACCCAAAGGCTTGGAAATCTCTGCAC
CC
CAACTGTTGCTCTCCGGCACCGACATCGGCTCCATCGCCCTCAACAGCCCAGCCCTCCCCTCAGGATC
C
CTCACTCCAGCCTTCTTCACCGCACAGACACCAAGTGGACTGTTTCTGGCCTCGAGTCCGCTGCTGCCC
AGC
ATACACTTCTGGAGCAGCCTTAGTCCTGTCGCCCCACTGAGTCCTGCCAGGCTGCAAGGGCCGAACA
CA
CTTTTCCAGTTCCCCACACTGCTCAACGGTCACATGCCGGTGCCGCTCCCCAGTCTGGACAGAGCTCC
A
TCCCCAGTTCTGCTGTCCCCCAGCTCTCAGAAATCCTGA


Translation (409 aa):
MESAITLWQFLLHLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALRYYYDKN
I
IKKVIGQKFVYKFVSFPDILKMDPHAVEISRESLLLQDGDCKVSPEGREVHRHGLSSLKSASRNEYLHS
G
LYSSFTINSLQNAPEAFKAIKTEKLEEPCDDSPPVEEVRTVIRFVTNKTDKHITRPVVSLPSTSETAAA
A
ASAFLASSVSAKISSLMLPNAASISSASPSSSRSPSLSPDSPLPSEHRSLFLEAACHDSDSLEPLNLSS
G
SKTKSPSLPPKGKKPKGLEISAPQLLLSGTDIGSIALNSPALPSGSLTPAFFTAQ
TPSGLFLASSPLLP
S
IHFWSSLSPVAPLSPARLQGPNTLFQ
FPTLLNGHMPVPLPSLDRAPSPVLLSPSSQKS



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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