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Report for CCDS38295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38295.1 Public Mus musculus 2 Ncoa6 23 108 98 CCDS HistoryNCBI Gene:56406Re-query CCDS DB by CCDS ID:38295.1Re-query CCDS DB by GeneID:56406See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043126.11 ENSMUSP00000045386.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043126.11Link to Ensembl Protein Viewer:ENSMUSP00000045386.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043126Re-query CCDS DB by Protein ID:ENSMUSP00000045386
Original member Current member EBI ENSMUST00000109670.7 ENSMUSP00000105295.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109670.7Link to Ensembl Protein Viewer:ENSMUSP00000105295.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109670Re-query CCDS DB by Protein ID:ENSMUSP00000105295
Original member NCBI NM_019825.3 NP_062799.2 Updated not alive Link to Nucleotide Sequence:NM_019825.3Link to Protein Sequence:NP_062799.2Re-query CCDS DB by Nucleotide ID:NM_019825Re-query CCDS DB by Protein ID:NP_062799
Current member NCBI NM_019825.4 NP_062799.2 Accepted alive Link to Nucleotide Sequence:NM_019825.4Link to Protein Sequence:NP_062799.2Re-query CCDS DB by Nucleotide ID:NM_019825Re-query CCDS DB by Protein ID:NP_062799Link to BLAST:NP_062799.2

Chromosomal Locations for CCDS 38295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155391177 155391220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155395720 155395871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155399655 155399691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155402672 155402740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155405475 155408450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155411525 155411646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155414812 155415928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155418878 155419024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155420967 155421869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155422811 155422939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155432816 155432938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155433933 155434088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155437860 155438094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6210 nt):
ATGGTTTTGGATGACCTTCCAAACTTTGAAGACATCTATACTTCCTTGTGTTCATCTACAATGGGCGACT
CA
GAGGTGGAGTTTGACTCTGGACTAGAAGATGATGACACGAAAAGTGATAGTATTTTGGAGGATTCCAC
A
ATTTTTGTAGCCTTCAAAGGAAATATAGATGATAAAGACTTCAAATGGAAACTGGATGCAATATTAAAG
AAT
GTGCCCAACTTGTTACACATGGAATCCAGCAAGCTAAAGGTACAGAAGGTGGAGCCCTGGAACAGCG
TG
CGAGTCACATTCAACATCCCCCGGGAAGCAGCAGAACGGCTACGGATCCTGGCTCAGAGCAACAACCA
G
CAGCTTCGGGACCTGGGGATTCTCTCCGTTCAGATTGAAGGGGAAGGTGCTATCAACCTGGCTTTGGGT
CAG
AACCGAAGCCAAGATGTGAGAATGAATGGACCTGTGGCATCTGGAAATTCCGTTAGGATGGAGGCAG
GA
TTTCCCATGGCAAGTGGTCCAGGTCTAATAAGGATGACGAGCCCTGCCGCTGTTATGACGCCCCAGGG
C
GGGAACATGTCATCTTCCATGATGGCACCAGGCCCCAATCCAGAACTGCAACCCAGGACTCCTCGCCCT
GCT
TCTCAGTCAGATGCAATGGATCCACTTCTCTCTGGACTCCATATACAGCAACAGAGTCATCCCTCAG
GA
TCTTTACCTCCAGCGCATCACTCAATGCAGCCTGTTCCTGTGAACAGACAAATGAACCCAGCTAATTT
T
CCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACAGCAACAGCAGCAA
CAG
CAACAGCAGCAGCAACAACAGCAGCAGCAACAGTTGCAGACAAGACCTCTACAGCAACATCAGCAAC
AG
CCACAGGGGATTCGACCACAGTTTACTGCTCCAACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCT
G
CCTTCTGGAGCCTTACAGCCTCCACCAGCCCAGGGATCTCTGGGCACAATGACTACAAATCAAGGGTGG
AAG
AAGGCTCCCTTGCCTAGCCCAATGCAAGCGCAACTTCAGGCAAGACCTTCCTTAGCTACGGTACAGA
CA
CCTTCTCACCCTCCCCCTCCTTATCCTTTTGGCAGCCAACAAGCCTCACAAGCCCATACAAACTTTCC
T
CAAATGAGCAACCCAGGCCAGTTCACAGCTCCTCAGATGAAGGGCTTGCAGGGAGGGCCCTCCAGGGTC
CCA
ACCCCCCTGCAACAGCCCCACCTCACCAACAAGTCTCCTGCCTCCTCACCCTCCTCCTTTCAGCAGG
GA
TCTCCTGCATCCTCCCCAACGGTTAACCAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAA
C
CCACTTTCCCAGGGATTTCAGCAGCCTGTCAGCTCTCCAGGTCGGAATCCTATGGTTCAACAGGGAAAT
GTG
CCACCTAATTTCATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACATCCAGGCC
TA
GGAGGAATGCCTAAACGCCTCCCGCCTGGCTTCTCAGCAGGACAGGCCAATCCCAACTTCATGCAAGG
T
CAGGTGCCTTCCACCACAGCAGCCACCCCTGGGAATTCAGGAGCCCTTCAGCTGCAAGCAAATCAAAAT
GTC
CAGCACGCAGGTGGTCAAGGAGCTGGTCCTCCTCAAAACCAGATGCAGGTGTCTCACGGGCCACCAA
AT
ATGATGCAACCCAGCCTCATGGGAATTCATGGCAACATAAACAACCAGCAGGCTGGTAGCTCTGGGGT
T
CCTCAGGTGACCCTGGGCAACATGCAAGGCCAGCCCCAGCAAGGCCCACCATCTCAGCTGATGGGCATG
CAC
CAACAGATTGTGCCCTCACAGGGCCAAATGGCCCAGCAACAAGGAACTTTGAACCCTCAAAATCCTA
TG
ATCCTTTCAAGGGCCCAGCTTATGCCACAGGGCCAGATGATGGTGAACGCTCAAAACCAAAATCTTGG
A
CCTTCACCCCAAAGGATGACCCCACCCAAGCAGATGCTTCCCCAGCAGGGCCCACAAATGATGGCACCA
CAT
AACCAGATGATGGGGCCTCAGGGGCAAGTTTTGCTCCAGCAGAACCCAATGATAGAGCAAATAATGA
CC
AATCAGATGCAGGGGAATAAGGCGCAATTTAACTCTCAGAACCAATCCAATGTCATGCCGGGACCAGC
A
CAAATAATGAGGGGACCAACTCCGAATATGCAAGGAAACATGGTGCAATTCACAGGACAGATGTCAGGA
CAG
ATGCTGCCTCAGCAAGGACCTGTGAACAACAGTCCATCTCAGGTTATGGGGATTCAGGGGCAGGTTC
TG
CGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACAGCAAATAATGA
T
GTCAACCTGTCTCAGATGATGCCTGATGTCAGCATGCAGCAAGCCAGCATGGTCCCCCCACATGTGCAG
AGC
ATGCAGGGAAACAGTGCTTCGGGAAGCCACTTCTCGGGCCATGGAGTGTCTTTCAATGCACCATTTG
GT
GGTGCACCCAATGGAAGTCAGATGTCTTGTGGTCAAAATCCAGGCTTTCCCGTCAATAAAGATGTAAC
G
TTAACGAGCCCATTGTTGGTCAACTTACTACAGAGTGACATTTCTGCAGGCCATTTTGGTGTAAACAAT
AAA
CAAAATAATACCAATGCAAATAAACCGAAGAAGAAGAAACCGCCTCGGAAGAAGAAAAATTGTCACC
AA
GATCTAAACACCCCAGATAATCGTCCAACTGGTCTAGAGGAAGTTGATCAACAGTCATTACCTGGAGA
A
CAAGGAATCAACTTGGACACCACAGGCCCCAAACTGCCAGACTTTTCAAACCGGCCACCAGGTTATCCT
ACA
CAACCAGTTGAACAGAGGCCACTACCGCAGATGCCTCCTCAGCTCATGCAGCATGTCGCACCCCCAC
CA
CAGCCACCACAGCAGCAGCCACAACCACAACTGCCTCAGCAGCAGCAGCCACCACCACCTAGTCAGCC
A
CAGTCCCAGCAGCAGCAGCAGCAACAACAAATGATGATGATGCTCATGATGCAGCAAGATCCTAAATCC
ATT
AGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGC
CC
GTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCAAGGACCTGCCTCTGTGCCACCATCACC
T
GATAAACAGAGAATGCCGATGTCTGTGAATACTCCTATGGGAAGTAATTCAAGGAAAATGGTATACCAG
GAG
AACCCACAGAATTCTTCTAGCTCACCGCTAGGAGAGATGTCCTCACTTCCTGAAGCTAGTGGCAGTG
AA
GTACCATCTGTTGCAGGAGGCCCAAATAACATGCCCTCACATTTAGTAGTTTCTCAGAATCAATTAAT
G
ATGACAGGACCCAAACCTGGACCATCTCCCCTTTCAGCAACTCAAGGTGCAACTCCCCAGCAACCTCCT
GTA
AATTCCTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAACCCAGACATCTAGGC
CT
AAAACACCAAACAGAGCCAGCCCCAGACCCTATTATCCTCAGACACCCAACAACCGCCCTCCCAGCAC
A
GAACCTTCAGAAATCAGTCTATCTCCAGAGAGACTCAATGCTTCCATAGCAGGACTCTTCCCTCCACAG
ATT
AATATTCCTTTACCTCCCAGGCCAAATTTAAATAGGGGCTTTGATCAACAGGGCTTAAATCCAACAA
CT
CTGAAGGCCATTGGGCAAGCACCTTCAAATCTTACTATAACTAATCCTCCTAACTTTGCTGCCCCACA
A
GCTCATAAATTAGATTCTGTGGTGGTGAATTCTGGAAAACAGTCTAATCCTGGAACAACAAAACGGGCA
AGT
CCAAGCAACAGTCGCAGGTCGAGTCCTGGGTCCAGTAGGAAAACTACCCCAAGTCCTGGAAGGCAAA
AC
TCAAAAGCTCCTAAACTTACTCTGGCTTCTCAAACAAGCACAACCATGTTGCAGAACATGGAGCTGCC
T
AGAAATGTGTTGGTTGGTCCCACTCCACTTGCCAATCCCCCTTTACCTGGAAGCTTTCCTAACAATACT
GGG
CTTAATCCTCAGAATCCCACGGTGCCTGTGCCTGCAATGGGGACTGTCCTTGAGGATAACAAGGAGA
GT
GTGAATATTCCTCAGGACAGTGACTGCCAGAATGCCCAGGGTAGGAAGGAGCAGGTAAACACTGAGCT
G
AAAGTAGTCCCTACCCAAGAAGCTAAAATGGCTGTCCCTGAAGATCAATCCAAAAAGGATGGGCAACCA
TTG
GATCCTAACAAACTCCCCAGTGTTGAAGAGAACAAAAATTTGATGTCTCCTGCCATGAGAGAAGCAC
CA
ACATCATTAAGCCAACTTCTTGACAACTCTGGAGCTCCTAATGTGACCATTAAACCCCCTGGGCTTAC
A
GATCTGGAAGTAACACCTCCAGTAGTTTCAGGAGAGGACCTTAGAAAAGCATCTGTCATTCCCACACTG
CAG
GATCCGCCTTCTAAAGAACCCTCTACTTCTTTAAGCTCACCTCACAGTAGTGAGCCGTGCTCAACAC
TT
GCGCGTTCAGAATTGAGTGAGGTCAGCTCTAACACTGCACCAAGCATCCCTCCAGTAATGTCAAGACC
C
GTCAGCTCTTCCTCCATTTCTACTCCCTTACCTCCAAACCAAATAACTGTATTTGTTACTTCCAACCCC
ATC
ACCACTTCATCTAACACATCAGCAGCCCTGCCAACTCACTTGCAGTCTGCATTGATGTCAACAGTCG
TC
ACAATGCCCAACGTGGGTAACAAAGTTATGGTTTCTGAAGGACAGTCAGCTGCTCAGTCTAATGCCCG
G
CCTCAGTTCATTACACCTGTCTTTATCAACTCATCTTCAATAATTCAGGTTATGAAAGGATCACAGCCA
AGC
ACAATTCCTGCAACCCCATTGACAACCAACAGTGGCCTGATGCCTCCCTCTGTCGCAGTTGTTGGAC
CT
TTACACATACCTCAGAACATAAAATTTTCTTCAGCTCCTGTAACACCTAATGTCCCCTCCAGTAGTCC
T
GCTCCAAATATACAGACAGGTCGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTTCAGCTGCCTTCC
CCT
CCTTGTACATCCTCTCCAGTTGTCGCTCCTAATCCTTCTGTCCAGCAAGTAAAAGAATTAAATCCAG
AT
GAGGCTAGTCCTCAGACGAACACCTCAGCAGACCAGAGCACTCTGCCTCCTTCACAGCCAACCACAGT
A
GTTTCTCCCCTTTTGACCAATAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGTCTCATCCAGTAAG
GGC
AAAGGAAAAGTGGACAAAATTGGCCAGATTTTGCTGACCAAGGCTTGTAAGAAAGTTACAGGCTCTC
TG
GAGAAAGGGGAAGAACAATATGGTGCAGATGGAGAGACTGAAGGCCCAGGGCTAGAGATCACAACTCC
T
GGGCTAATGGGAACAGAGCAGTGCTCCACAGAGCTGGACAGTAAAACCCCAACACCCTCAGCACCCACT
CTA
CTAAAAATGACCTCTAGCCCCATGGGCCCAAGCTCCACCTCAACAGGACCCATCTTACCTGGCGGTG
CT
CTTCCCACCAGTGTACGCTCAATAGTAACCACATTGGTACCCTCTGAGCTCATCTCCACAGCGCCAAC
C
ACAAAAGGCAATCATGGTGGCGTAACATCTGAGCCACTTGCAGGTGGCCTAGTGGAGGAGAAGGTGGGA
TCC
CATCCAGAGCTTCTACCCAGCATAGCCCCTTCACAGAATTTAGCCCCAAAGGAAACTCCAGCCACAG
CA
CTGCAAGGGTCTGTTGCTAGACCAGAACTTGAGGCAAATGCTGCCATAGCCTCTGGACAAAGCTGTGA
G
CCAAAAGAGATAGTTGAGAAGTCCAAAACCCTGACGAGCCGAAGAAACTCTCGAACTGAGGAGCCAACT
ATG
GCTTCTGAGAGCGTGGAAAATGGACATCGAAAAAGATCCTCTCGACCTGCTTCGGCCTCCAGCTCTA
CT
AAAGATATAACTGGTGCCGTGCAATCCAAGCGAAGAAAATCCAAGTAA


Translation (2069 aa):
MVLDDLPNFEDIYTSLCSSTMGDSEVEFDSGLEDDDTKSDSILEDSTIFVAFKGNIDDKDFKWKLDAILK
N
VPNLLHM
ESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQIEGEGAINLALG
Q
NRSQDVRMNGPVASGNSVRMEAGFPMASGP
GLIRMTSPAAVMTPQGGNMSSSMMAPGPNPELQPRTPRP
A
SQS
DAMDPLLSGLHIQQQSHPSGSLPPAHHSMQPVPVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQQQ
Q
QQQQQQQQQQQLQTRPLQQHQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGTMTTNQGW
K
KAPLPSPMQAQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFPQMSNPGQFTAPQMKGLQGGPSRV
P
TPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQNNPLSQGFQQPVSSPGRNPMVQQGN
V
PPNFMVMQQQPPNQGPQSLHPGLG
GMPKRLPPGFSAGQANPNFMQGQVPSTTAATPGNSGALQLQANQN
V
QHA
GGQGAGPPQNQMQVSHGPPNMMQPSLMGIHGNINNQQAGSSGVPQVTLGNMQGQPQQGPPSQLMGM
H
QQIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAP
H
NQMMGPQGQVLLQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSG
Q
MLPQQGPVNNSPSQVMGIQGQVLRPPGPSPHMAQQHNDPVTTANNDVNLSQMMPDVSMQQASMVPPHVQ
S
MQGNSASGSHFSGHGVSFNAPFGGAPNGSQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNN
K
QNNTNANKPKKKKPPRKKKNCHQDL
NTPDNRPTGLEEVDQQSLPGEQGINLDTTGPKLPDFSNRPPGYP
T
QPVEQRPLPQMPPQLMQHVAPPPQPPQQQPQPQLPQQQQPPPPSQPQSQQQQQQQQMMMMLMMQQDPKS
I
RLPVSQNVHPPRGPLNPDSQRMPVQQSGNVPVMVGLQGPASVPPSPDKQRMPMSVNTPMGSNSRKMVYQ
E
NPQNSSSSPLGEMSSLPEASGSEVPSVAGGPNNMPSHLVVSQNQLMMTGPKPGPSPLSATQGATPQQPP
V
NSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQ
I
NIPLPPRPNLNRGFDQQGLNPTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVVVNSGKQSNPGTTKRA
S
PSNSRRSSPGSSRKTTPSPGRQNSKAPKLTLASQTSTTMLQNMELPRNVLVGPTPLANPPLPGSFPNNT
G
LNPQNPTVPVPAMGTVLEDNKESVNIPQDSDCQNAQGRKEQVNTELKVVPTQEAKMAVPEDQSKKDGQP
L
DPNKLPSVEENKNLMSPAMREAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPPVVSGEDLRKASVIPTL
Q
DPPSKEPSTSLSSPHSSEPCSTLARSELSEVSSNTAPSIPPVMSRPVSSSSISTPLPPNQITVFVTSNP
I
TTSSNTSAALPTHLQSALMSTVVTMPNVGNKVMVSEGQSAAQSNARPQFITPVFINSSSIIQVMKGSQP
S
TIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVTPNVPSSSPAPNIQTGRPLVLSSRATPVQLPS
P
PCTSSPVVAPNPSVQQVKELNPDEASPQTNTSADQSTLPPSQPTTVVSPLLTNSPGSSANRRSPVSSSK
G
KGKVDKIGQILLTKACKKVTGSLEKGEEQYGADGETEGPGLEITTPGLMGTEQCSTELDSKTPTPSAPT
L
LKMTSSPMGPSSTSTGPILPGGALPTSVRSIVTTLVPSELISTAPTTKGNHGGVTSEPLAGGLVEEKVG
S
HPELLPSI
APSQNLAPKETPATALQGSVARPELEANAAIASGQSCEPKEIVEKSKTLTSRRNSRTEEPT
M
ASESVENGHRKRSSRPASASSSTK
DITGAVQSKRRKSK



Links Key
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  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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