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Report for CCDS37891.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
37891.1 |
Public |
Mus musculus |
19 |
Ltbp3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:16998](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:37891.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:16998](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 37891.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000081496.5 |
ENSMUSP00000080214.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000081496.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000080214.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000081496](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000080214](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_008520.3 |
NP_032546.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_008520.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032546.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008520](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032546](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_032546.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_032546.2 |
1253 |
Q61810-1 |
1253 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 37891.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3762 nt): ATGCCCGGGCCCCGAGGGGCTGCCCACGGCCTGGCCCCTGCGATGCGCCAGGCCGGGGCATTGGGGCTGC TGGCACTACTCCTGCTGGCGCTGCTGGGCCCCGGCGGCGGGGCCGAGGGTGGGCCGGCCGGCGAGCGGGG CACAGGCGGGGGCGGGGCGCTGGCCCGCGAACGCTTCAAGGTGGTCTTTGCGCCAGTGATCTGCAAGCGG ACCTGTCTGAAGGGCCAGTGTCGGGACAGCTGTCAGCAGGGCTCCAACATGACGCTCATCGGAGAGAACG GCCACAGCACCGACACGCTCACCGGTTCTGGCTTCCGCGTGGTGGTGTGCCCTCTACCCTGCATGAACGG TGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCT GCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAG GCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGT GATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGG CCAGGACAAATCTCGGCAGAAGTGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTG AAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCT GCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACA TTGCCCAAGCAGCCTTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCA TCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTATACAGGGGTGCAGAAGCC TGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGC CAGGATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTT ATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTGCCGACAAACCAGA GGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTA ACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATG GTACAGCAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCT CACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTT CCTGAAAGCCCCAGCCGAGCACCACCCCTCGAGGACACAGAGGAAGAGAGAGGAGTGACCATGGATCCAC CAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCC AGAGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGT GCAGTGGAGATCGCCCCCACTCAGGTCACAGAGACCGATGAGTGCCGATTGAACCAGAATATCTGTGGCC ATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACGCTGGCTACCGGTCACACCCGCA GCACCGCTACTGTGTTGATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATG AACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCT CGTGCGTGGACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCC TGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAGAC ATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGT GCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTGATGTCAACGAATGCTCCGA GGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGA TACGAACCCGCACAGGACGGCCTCAGTTGCATAGACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAG ATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGA TCGGAGCCGCTGTGAGGACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAAT ACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAGATA TAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTA TGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGGAGGTGGAGCAGCCC CACCACAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATG TCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCC AGTCTACAGCTCAGCCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATT GTGAACTATGGCATTCCTGCCCACCGTGACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGG AGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAA CCTGCTGGAGTGCGTGGACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAAC ACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGA GCCCGGAGGAGATGGAGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCAT GTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGG GGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCGGGTCCCAGTGCCCGACTTCACAGAGTGAGAGCA ATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAGACGAAGACAGCTCAGAGGAGGA TTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCT GGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGGACATTGATGAGTGCCGAGAACTGAACCAGC GGGGACTACTGTGTAAGAGCGAGCGGTGCGTGAACACCAGTGGATCCTTCCGCTGTGTCTGCAAAGCTGG CTTCACGCGCAGCCGCCCTCACGGGGCCTGCGTGCCTCAGCGCCGCCGCTGA
Translation (1253 aa): MPGPRGAAHGLAPAMRQAGALGLLALLLLALLGPGGGAEGGPAGERGTGGGGALARERFKVVFAPVICKR TCLKGQCRDSCQQGSNMTLIGENGHSTDTLTGSGFRVVVCPLPCMNGGQCSSRNQCLCPPDFTGRFCQVP AAGTGAGTGSSGPGLARTGAMSTGPLPPLAPEGESVASKHAIYAVQVIADPPGPGEGPPAQHAAFLVPLG PGQISAEVQAPPPVVNVRVHHPPEASVQVHRIEGPNAEGPASSQHLLPHPKPQHPRPPTQKPLGRCFQDT LPKQPCGSNPLPGLTKQEDCCGSIGTAWGQSKCHKCPQLQYTGVQKPGPVRGEVGADCPQGYKRLNSTHC QDINECAMPGMCRHGDCLNNPGSYRCVCPPGHSLGPSRTQCIADKPEEKSLCFRLVSTEHQCQHPLTTRL TRQLCCCSVGKAWGARCQRCPADGTAAFKEICPAGKGYHILTSHQTLTIQGESDFSLFLHPDGPPKPQQL PESPSRAPPLEDTEEERGVTMDPPVSEERSVQQSHPTTTTSPPRPYPELISRPSPPTFHRFLPDLPPSRS AVEIAPTQVTETDECRLNQNICGHGQCVPGPSDYSCHCNAGYRSHPQHRYCVDVNECEAEPCGPGKGICM NTGGSYNCHCNRGYRLHVGAGGRSCVDLNECTKPHLCGDGGFCINFPGHYKCNCYPGYRLKASRPPICED IDECRDPSTCPDGKCENKPGSFKCIACQPGYRSQGGGACRDVNECSEGTPCSPGWCENLPGSYRCTCAQG YEPAQDGLSCIDVDECEAGKVCQDGICTNTPGSFQCQCLSGYHLSRDRSRCEDIDECDFPAACIGGDCIN TNGSYRCLCPQGHRLVGGRKCQDIDECSQDPGLCLPHGACENLQGSYVCVCDEGFTLTQDQHGCEEVEQP HHKKECYLNFDDTVFCDSVLATNVTQQECCCSLGAGWGDHCEIYPCPVYSSAEFHSLCPDGKGYTQDNNI VNYGIPAHRDIDECILFGAEICKEGKCVNTQPGYECYCKQGFYYDGNLLECVDVDECLDESNCRNGVCEN TRGGYRCACTPPAEYSPAQRQCLSPEEMEHAPERREVCWGQRGEDGMCMGPLAGPALTFDDCCCRQGRGW GTQCRPCPPRGTGSQCPTSQSESNSFWDTSPLLLGKSPRDEDSSEEDSDECRCVSGRCVPRPGGAVCECP GGFQLDASRARCVDIDECRELNQRGLLCKSERCVNTSGSFRCVCKAGFTRSRPHGACVPQRRR
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