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Report for CCDS16670.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
16670.1 |
Public |
Mus musculus |
2 |
Sema6d |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:214968](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:16670.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:214968](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 16670.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000051419.14 |
ENSMUSP00000061123.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000051419.14](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000061123.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000051419](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000061123](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_172537.4 |
NP_766125.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_172537.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_766125.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_172537](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_766125](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_172537.5 |
NP_766125.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_172537.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_766125.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_172537](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_766125](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_766125.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_766125.2 |
1011 |
Q76KF0-2 |
1011 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 16670.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3036 nt): ATGGGGTTCCTTCTGCTTTGGTTCTGCGTGCTGTTCCTTCTGGTCTCCAGGTTACGGGCGGTCAGCTTCC CAGAAGACGATGAGCCCCTCAACACGGTTGACTATCACTATTCAAGGCAATATCCGGTTTTTAGAGGACG CCCTTCAGGCAACGAATCGCAGCACAGGCTGGACTTTCAGCTGATGTTGAAAATTCGAGACACACTTTAT ATTGCTGGCAGGGATCAAGTCTATACAGTGAACTTAAATGAAATCCCCCAAACAGAGGTGATACCAAGCA AGAAGCTGACGTGGAGGTCCAGACAGCAGGATCGAGAAAATTGTGCTATGAAAGGCAAGCATAAAGATGA ATGCCACAACTTCATCAAAGTCTTTGTCCCAAGAAATGATGAGATGGTTTTTGTCTGTGGTACCAATGCT TTCAACCCGATGTGCAGATACTATAGGTTGAGAACGTTAGAGTATGATGGGGAAGAAATTAGTGGCCTGG CACGATGCCCGTTTGATGCCCGACAAACCAATGTCGCCCTCTTTGCTGATGGAAAACTCTATTCTGCCAC AGTGGCTGATTTCCTGGCCAGTGATGCTGTCATTTACAGAAGCATGGGAGATGGATCTGCCCTTCGCACA ATAAAATACGATTCCAAGTGGATCAAAGAACCACACTTCCTTCATGCCATAGAATATGGAAACTATGTCT ATTTCTTCTTCAGAGAAATCGCCGTGGAACATAATAACTTAGGCAAGGCTGTGTATTCCCGCGTGGCTCG CATTTGTAAAAACGACATGGGTGGCTCACAGCGGGTCCTGGAGAAACACTGGACTTCCTTCCTTAAGGCT CGGCTGAACTGCTCCGTTCCTGGAGATTCCTTTTTCTACTTCGACGTCCTGCAGTCTATAACAGACATAA TCCAAATCAATGGCATCCCCACTGTGGTTGGGGTCTTCACCACACAGCTCAACAGCATTCCTGGTTCTGC AGTCTGTGCCTTTAGCATGGACGACATTGAGAAAGTGTTCAAAGGGCGGTTCAAAGAGCAGAAAACCCCA GACTCTGTTTGGACAGCAGTTCCCGAAGACAAAGTACCAAAACCAAGGCCTGGCTGTTGTGCCAAACACG GCCTCGCAGAAGCTTACAAGACCTCCATCGACTTTCCAGATGACACCCTGGCTTTCATCAAGTCCCACCC GCTGATGGACTCTGCCGTCCCACCCATTGCCGATGAGCCCTGGTTCACAAAGACACGGGTCAGGTACAGG TTGACAGCCATCGAAGTGGACCGTTCAGCAGGGCCATACCAAAACTACACAGTCATCTTTGTTGGCTCTG AAGCTGGCGTGGTACTTAAAGTTTTGGCAAAGACCAGTCCTTTCTCTCTGAATGACAGTGTATTACTCGA AGAGATTGAAGCTTATAACCCAGCCAAGTGCAGCGCCGAGAGTGAGGAGGACAGAAAGGTGGTCTCATTA CAGCTGGACAAGGATCACCATGCTTTATACGTGGCCTTCTCTAGCTGCGTGGTCCGCATCCCCCTCAGCC GCTGTGAGCGCTACGGATCGTGTAAAAAGTCTTGCATTGCATCACGTGACCCGTACTGTGGTTGGTTAAG CCAGGGAGTTTGTGAGAGAGTGACCCTAGGGATGCTGCTGTTAACCGAAGACTTCTTTGCTTTCCATAAC CACAGCCCTGGAGGATATGAGCAGGACACGGAGTACGGCAACACAGCCCACCTAGGGGACTGCCACGGTG TACGGTGGGAAGTCCAGTCTGGAGAATCCAATCAGATGGTCCACATGAATGTCCTCATCACCTGCGTGTT TGCCGCTTTTGTCTTGGGCGCGTTCATCGCAGGAGTGGCCGTGTACTGCTACCGTGACATGTTCGTTCGG AAGAACAGAAAGATCCATAAAGACGCAGAATCCGCCCAGTCGTGCACAGACTCCAGCGGAAGCTTCGCCA AGCTGAACGGCCTCTTTGACAGCCCCGTCAAGGAATACCAGCAGAACATTGATTCTCCCAAACTCTACAG CAACCTGCTGACCAGTCGGAAGGAACTGCCACCAAACACGGATACAAAGTCCATGGCCGTGGACCACAGA GGCCAGCCTCCCGAGCTGGCTGCTCTCCCCACGCCGGAATCCACACCTGTCCTCCACCAGAAGACCCTGC AGGCCATGAAGAGCCACTCTGAGAAGGCCCACAGCCACGGTGCTTCAAGGAAAGAACACCCCCAGTTTTT TCCTTCTAGTCCTCCACCCCATTCCCCATTGAGTCACGGGCATATCCCCAGTGCCATCGTTCTTCCAAAC GCCACTCACGACTACAATACATCCTTCTCCAACTCGAATGCCCACAAAGCCGAAAAGAAGCTTCAGAGCA TGGATCACCCTCTTACGAAGTCATCCAGTAAGCGGGAGCACCGGCGGTCTGTGGATTCCAGGAATACTCT CAATGATCTCCTGAAGCATCTAAATGACCCAAACAGTAACCCCAAAGCCATCCTGGGAGAGATCCATATG GCTCATCAAACCCTCATGCTGGACCCGGTGGGACCAATGGCTGAGGTCCCACCCAAGGTCCCTAACCGGG AGGCATCTCTATACTCCCCTCCCTCCACACTCCCCAGAAATAGTCCAACCAAGAGAGTAGATGTCCCCAC CACTCCTGGGGTGCCAATGACTTCTCTGGAAAGACAAAGGGGTTATCACAAAAATTCCTCCCAGAGGCAC TCTATATCTGCCGTGCCTAAAAACTTAAACTCACCAAATGGTGTTTTGTTATCTAGACAGCCGAGTATGA ACCGTGGAGGCTATATGCCCACCCCAACAGGGGCGAAGGTGGACTATATTCAGGGGACACCGGTGAGTGT TCATCTGCAGCCCTCCCTCTCCAGACAGAGCAGCTATACCAGTAATGGCACCCTCCCCAGGACGGGACTA AAGAGGACACCATCCTTAAAACCTGATGTGCCACCAAAGCCTTCCTTTGTTCCGCAAACCACATCTGTCA GACCACTGAACAAGTACACGTACTAG
Translation (1011 aa): MGFLLLWFCVLFLLVSRLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQLMLKIRDTLY IAGRDQVYTVNLNEIPQTEVIPSKKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVPRNDEMVFVCGTNA FNPMCRYYRLRTLEYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRT IKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKA RLNCSVPGDSFFYFDVLQSITDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTP DSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDDTLAFIKSHPLMDSAVPPIADEPWFTKTRVRYR LTAIEVDRSAGPYQNYTVIFVGSEAGVVLKVLAKTSPFSLNDSVLLEEIEAYNPAKCSAESEEDRKVVSL QLDKDHHALYVAFSSCVVRIPLSRCERYGSCKKSCIASRDPYCGWLSQGVCERVTLGMLLLTEDFFAFHN HSPGGYEQDTEYGNTAHLGDCHGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVR KNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNTDTKSMAVDHR GQPPELAALPTPESTPVLHQKTLQAMKSHSEKAHSHGASRKEHPQFFPSSPPPHSPLSHGHIPSAIVLPN ATHDYNTSFSNSNAHKAEKKLQSMDHPLTKSSSKREHRRSVDSRNTLNDLLKHLNDPNSNPKAILGEIHM AHQTLMLDPVGPMAEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRH SISAVPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSNGTLPRTGL KRTPSLKPDVPPKPSFVPQTTSVRPLNKYTY
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