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Report for CCDS37453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37453.1 Public Mus musculus 17 Fam120b 23 108 98 CCDS HistoryNCBI Gene:67544Re-query CCDS DB by CCDS ID:37453.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055352.7 ENSMUSP00000054420.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055352.7Link to Ensembl Protein Viewer:ENSMUSP00000054420.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055352Re-query CCDS DB by Protein ID:ENSMUSP00000054420
Original member Current member NCBI NM_001357822.1 NP_001344751.1 Accepted alive Link to Nucleotide Sequence:NM_001357822.1Link to Protein Sequence:NP_001344751.1Re-query CCDS DB by Nucleotide ID:NM_001357822Re-query CCDS DB by Protein ID:NP_001344751Link to BLAST:NP_001344751.1
Original member Current member NCBI NM_024203.3 NP_077165.2 Accepted alive Link to Nucleotide Sequence:NM_024203.3Link to Protein Sequence:NP_077165.2Re-query CCDS DB by Nucleotide ID:NM_024203Re-query CCDS DB by Protein ID:NP_077165Link to BLAST:NP_077165.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344751.1 786 Q6RI63-1 786 100% 0 0
NP_077165.2 786 Q6RI63-1 786 100% 0 0

Chromosomal Locations for CCDS 37453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15401762 15403129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15405755 15405935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15407597 15407698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15414679 15414851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15417633 15417725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15422878 15423084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15424270 15424378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15426189 15426275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15431577 15431617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2361 nt):
ATGGGTGTAAGAGGTTTGCAGGGGTTTGTGGGGAGTACGTGCCCACACATATGTACCATAGTCAATATCC
AC
GAGCTGGCAGAGCGTCACCGAAACAAGTACCCTGGATGTACGCCTACCATCGTGGTGGACGCCATGTG
C
TGTCTCCGATACTGGTACACAGCAGAGTCGTGGGTCTGCGGCGGCCAGTGGAGAGAATACTACTGTGCT
TTG
AGAAATTTTGTTGCAGCCTTCACCTCTGCCGGCATCAAGTTGATATTCTTCTTTGATGGCATGGTGG
AG
CCGGGGAAGCGAGATGAGTGGGTAAAGCGTAGACTCAAAAACAACCGGGAGATATCCAAGATTTTTCA
C
TACATCAAGTCAAAAAGAGACCAGCCAGGCAGAAACATGTTCTTCATTCCCTCTGGGCTGGCCATATTC
ACA
CGGTTCGCCCTGAAGACACTGGGCCAGGAGACTTTCTGTTCATTACAGGAGGCAGACTACGAGGTGG
CT
TCTTATGGCCTCCAGCACAACTGTCTGGGGATCCTTGGGGAAGACACTGACTACTTAATTTATGACAC
T
TGCCCCTACTTTTCAATTGGCGATCTCTGCCTAGAGAGTCTCCAAACCATCATGCTCTGTCGAGAGAAG
CTC
TGTGAGAGCCTGGGCCTCCGTGTGGCAGACCTTCCTCTTCTGGCCTGTCTGCTTGGCAATGACATCA
CT
CCAGAGAGCATGTTTGAAAGCTTTCGGTACAAGTGCTTGTCATCCTATGCTTCTGTGAAAGAGAATGC
T
GGCAAAAAAGGAAATATTATCCTAGCTGTCTCAGACTATATCTCCAAAGTTCTTCATTTGTATCAAGGT
GAG
AAGAAGATAGAAGAGATGCTACCCTTGGGGCCAAACAAAGCTCTCTTTTATAAAGGAGTAACCTCAT
AT
CTTTTGCCAGGGCAGAAATCTCCATGGTTAGTTCAAAAACCCAAAGGCATGATAACAGACAAACAGCA
A
ATGGTGAGTTTAAATCCCGAATCCAAGCAAGAAGTCCCTATGTGTATTGATCCTGAATTCAAGCAAGAA
GTT
CCTGTGTGCACTAATCCCGAGTCCATGCAAGAAGTTCCCATGTGTATGGATCCTGAGCCCAACCAGG
AA
GCTTCCATGTGCACAGATCCCGAATCCAAACAAGAAGTTCCCATGTGCACAGACTCCGAATCCAAGCC
A
GAAGTTTCCCAATATACAAACCCAGAGAGCAAGCAAAAATTACCTTCAGGAATAGACACTGAATTTAAC
CTA
GAAGCACTCATGTGTACACACCCTGAATTTAAACAAGAAGATGTCATGGATATGGAACCTGAAATAA
AG
CAAGTAACCATGGTTTCCGAGTCTGAGATCTTAAAGGTTGCCAGGATGCATCACGTCCACTCAGAAAG
C
TACCTAGTGTACAACATTCTGAGCAGTGGGGAGATAGAATGCAGTAACACCCTGGAGGATGAGCTGGAC
CAA
GCCCTCCCGAGCCAAGCCTTTATCTACCGCCCAGTCCGGCAGCGCGTCTACGCACTCCTACTCGGGG
AC
TGGAAAGATGGAGCCAGCACTGGCCCAGTGGTCAAGGAGTGGTTTGTGTACCCCGGTAACTCCCTGAA
G
CACCCAGACCTAGTTAGGCCTCTGCAGATGACCGTTCAAGGGGGAACACCTAGCTTGGAAGTTCTGTGG
CTG
AGCCAAGAGCCAGCAGTGCAGGCCCAGCGCCTGGACACCTTGCTAGCCTGCTTCAACCTTTCCTCCT
CA
AGAGAAGAGCTGCAAGCAGTTGAGAGCCCGTTGAGAGCGCTGTGCTGCCTCCTGATCTACCTCTTTGT
C
CAGGTGGACACTCTTTCCCTGGAAGATCTGCATGCATTTATCGCTCAGGCCTTGTGCCTCCAAGGAAAA
TCA
ACCTCCCAGCTCATGCACTTACAGCTGGATTACATTAACTCCAGAGCTGTGCAGCTGGGATCCCTCC
TC
GTCCGTGGCCTCACCACATTGGTACTAGTCAATAGCGCATGTGGCTTCCCCTGGACAACAAGTGAGTT
T
ATGCCCTGGAATGTGTTTGATGGCAAGCTTTTCCATCAGAAGTACCTGCAGTCTGAAAAGGGATATGCC
GTG
GAAGTTCTTTTGGAACAAAATAGATCGTGGCTCACCAAGTTCCACAACCTGAAGGCAGTGGTCTGCA
AG
GCCTGCTCCAAGGAGAACCGGCGCATCGTAGGCAGAACGCATTGGGACTCTCCTTACACAGGGAGGCA
A
GGGAGACAGGGCTACAGCTCCTACAGGACAGACTCCACACATGGCCATTCTGGGCAGTCATGGAGAAAC
CAG
GGTTCAGGGGGCAGACAGCATGAGCGTAACCACTGGAGAAGATACTAG


Translation (786 aa):
MGVRGLQGFVGSTCPHICTIVNIHELAERHRNKYPGCTPTIVVDAMCCLRYWYTAESWVCGGQWREYYCA
L
RNFVAAFTSAGIKLIFFFDGMVEPGKRDEWVKRRLKNNREISKIFHYIKSKRDQPGRNMFFIPSGLAIF
T
RFALKTLGQETFCSLQEADYEVASYGLQHNCLGILGEDTDYLIYDTCPYFSIGDLCLESLQTIMLCREK
L
CESLGLRVADLPLLACLLGNDITPESMFESFRYKCLSSYASVKENAGKKGNIILAVSDYISKVLHLYQG
E
KKIEEMLPLGPNKALFYKGVTSYLLPGQKSPWLVQKPKGMITDKQQMVSLNPESKQEVPMCIDPEFKQE
V
PVCTNPESMQEVPMCMDPEPNQEASMCTDPESKQEVPMCTDSESKPEVSQYTNPESKQKLPSGIDTEFN
L
EALMCTHPEFKQEDVMDMEPEIKQVTMVSESEILK
VARMHHVHSESYLVYNILSSGEIECSNTLEDELD
Q
ALPSQAFIYRPVRQRVYALLLGDWK
DGASTGPVVKEWFVYPGNSLKHPDLVRPLQMTVQGGTPSLEVLW
L
SQEPAVQAQRLDTLLACFNLSSSREELQAVESPLRALCCLLIYLFVQ
VDTLSLEDLHAFIAQALCLQGK
S
TSQLMHLQ
LDYINSRAVQLGSLLVRGLTTLVLVNSACGFPWTTSEFMPWNVFDGKLFHQKYLQSEKGYA
V
EVLLEQN
RSWLTKFHNLKAVVCKACSKENRRIVGRTHWDSPYTGRQGRQGYSSYRTDSTHGHSGQSWRN
Q
GS
GGRQHERNHWRRY



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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