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Report for CCDS93388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93388.1 Public Homo sapiens 3 CEP63 24 110 108 CCDS HistoryNCBI Gene:80254Re-query CCDS DB by CCDS ID:93388.1Re-query CCDS DB by GeneID:80254See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93388.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514678.2 ENSP00000427526.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514678.2Link to Ensembl Protein Viewer:ENSP00000427526.2Re-query CCDS DB by Nucleotide ID:ENST00000514678Re-query CCDS DB by Protein ID:ENSP00000427526
Original member Current member EBI ENST00000684574.1 ENSP00000507386.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684574.1Link to Ensembl Protein Viewer:ENSP00000507386.1Re-query CCDS DB by Nucleotide ID:ENST00000684574Re-query CCDS DB by Protein ID:ENSP00000507386
Original member Current member EBI ENST00000683997.1 ENSP00000507552.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683997.1Link to Ensembl Protein Viewer:ENSP00000507552.1Re-query CCDS DB by Nucleotide ID:ENST00000683997Re-query CCDS DB by Protein ID:ENSP00000507552
Original member Current member NCBI NM_001353113.1 NP_001340042.1 Accepted alive Link to Nucleotide Sequence:NM_001353113.1Link to Protein Sequence:NP_001340042.1Re-query CCDS DB by Nucleotide ID:NM_001353113Re-query CCDS DB by Protein ID:NP_001340042Link to BLAST:NP_001340042.1
Original member Current member NCBI NM_001353117.2 NP_001340046.1 Accepted alive Link to Nucleotide Sequence:NM_001353117.2Link to Protein Sequence:NP_001340046.1Re-query CCDS DB by Nucleotide ID:NM_001353117Re-query CCDS DB by Protein ID:NP_001340046Link to BLAST:NP_001340046.1

Chromosomal Locations for CCDS 93388.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 134495321 134495364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134507109 134507286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134531845 134531940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134532778 134532900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134537155 134537268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134545586 134545819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134546149 134546288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134547335 134547472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134549062 134549176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134550063 134550260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134551926 134552012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134574793 134574891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGAGGCTTTGTTAGAAGGAATACAAAATCGAGGGCATGGTGGGGGATTTTTGACATCTTGTGAAGCAG
AACTACAGGAGCTCATGAAACAGATTGACATAATGGTGGCTCATAAAAAATCTGAATGGGAAGGACGTAC
ACATGCTCTAGAAACTTGCTTGAAAATCCGTGAACAGGAACTTAAGAGTCTTAGGAGTCAGTTGGATGTG
ACACATAAGGAGGTTGGAATGTTGCATCAGCAGGTAGAAGAACATGAAAAAATCAAGCAAGAGATGACCA
TGGAATATAAGCAGGAGTTGAAGAAACTACATGAAGAATTATGCATACTGAAGAGAAGCTATGAAAAGCT
TCAGAAAAAGCAAATGAGGGAATTCAGAGGAAATACCAAAAATCACAGGGAAGATCGGTCTGAAATTGAG
AGGTTAACTGCAAAAATAGAGGAATTCCGTCAGAAATCGCTGGACTGGGAGAAGCAACGCTTGATTTATC
AGCAACAGGTATCTTCACTGGAGGCACAAAGGAAGGCTCTGGCTGAACAATCAGAGATAATTCAGGCTCA
GCTTGTCAATCGGAAACAGAAATTAGAGTCTGTGGAACTTTCTAGCCAATCAGAAATTCAACACTTAAGC
AGTAAACTGGAGCGGGCTAATGACACTATCTGTGCCAATGAGTTGGAAATAGAGCGCCTCACCATGAGGG
TCAATGACTTGGTTGGAACCAGTATGACTGTCCTACAGGAGCAGCAGCAAAAAGAAGAAAAATTGAGGGA
ATCTGAAAAACTATTAGAGGCTCTGCAGGAAGAAAAGAGAGAATTGAAGGCAGCTCTTCAGTCTCAAGAA
AATCTCATACATGAGGCCAGAATACAAAAGGAGAAGTTACAAGAAAAAGTAAAGGCAACTAACACTCAAC
ATGCTGTAGAAGCTATAAGGCCACGGGAAGAATCTCTGGCAGAAAAGAAGTACACCTCTCAAGGGCAGGG
GGACTTAGACAGTGTGCTCTCCCAGTTGAATTTTACCCATACTAGTGAGGACCTTCTGCAGGCAGAGGTG
ACTTGTCTTGAAGGCAGTTTGGAATCTGTGAGTGCAACGTGTAAACAGCTGAGCCAAGAACTAATGGAAA
AATATGAAGAACTGAAGAGGATGGAAGCACATAACAATGAATACAAAGCAGAGATTAAGAAGTTGAAAGA
ACAGATTTTACAGGGTGAACAAAGTTACAGTTCTGCACTAGAAGGAATGAAGATGGAAATCTCCCATCTA
ACTCAGGAGTTACATCAGCGAGATATCACTATTGCTTCCACCAAAGGTTCTTCCTCAGACATGGAAAAGC
GACTCAGAGCAGAGATGCAAAAGGCAGAAGACAAAGCAGTAGAGCATAAGGAGATTTTGGATCAGCTGGA
GTCACTCAAATTAGAAAATCGTCATCTTTCTGAAATGGTGATGAAATTGGAATTGGGTTTACATGAGAGA
TGGGGTTTTACCATGTTGTCCAGTCTGGTTTTGAACTTCGGGATTCAAGCAATCCGCCAGCCTCAGCGTC
CCAAAGTGCTGGAATTACAAGTGTGA

Translation (521 aa):
MEALLEGIQNRGHGGGFLTSCEAELQELMKQIDIMVAHKKSEWEGRTHALETCLKIREQELKSLRSQLDV
THKEVGMLHQQVEEHEKIKQEMTMEYKQELKKLHEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIE
RLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSEIQHLS
SKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQE
NLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKKYTSQGQGDLDSVLSQLNFTHTSEDLLQAEV
TCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQILQGEQSYSSALEGMKMEISHL
TQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDKAVEHKEILDQLESLKLENRHLSEMVMKLELGLHER
WGFTMLSSLVLNFGIQAIRQPQRPKVLELQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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