NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS60453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60453.1 Public Homo sapiens 1 B3GALNT2 24 110 108 CCDS HistoryNCBI Gene:148789Re-query CCDS DB by CCDS ID:60453.1Re-query CCDS DB by GeneID:148789See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313984.3 ENSP00000315678.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000313984.3Link to Ensembl Protein Viewer:ENSP00000315678.3Re-query CCDS DB by Nucleotide ID:ENST00000313984Re-query CCDS DB by Protein ID:ENSP00000315678
Original member Current member NCBI NM_001277155.3 NP_001264084.1 Accepted alive Link to Nucleotide Sequence:NM_001277155.3Link to Protein Sequence:NP_001264084.1Re-query CCDS DB by Nucleotide ID:NM_001277155Re-query CCDS DB by Protein ID:NP_001264084Link to BLAST:NP_001264084.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264084.1 326 Q8NCR0-2 326 100% 0 0

Chromosomal Locations for CCDS 60453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 235465619 235465714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235470850 235470960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235480054 235480149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235484322 235484515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235489168 235489268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235494681 235494828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235496186 235496308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235504141 235504252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTCTGGCTGCGGCTGC
GCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGGTGGAGTCTCACTCTTGTTGCCCAGGCT
GGAGTGCAATGGCGCGGTCTCGGCTCACCCCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTGCCTCA
GCCTCCCAAGTAGCTGGGATAACAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGATG
TGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAG
ACATTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGT
GAAGTGCCTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGA
ATCAGGAAATTGAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAG
CGTGAGTTTCCGAGTTCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTG
GGTTTCCAGAGGAACATCACTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCT
TCAGTCCTCCAAGCTGTGGTGTGCAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACC
AGAGAGCTTTGAAGGTACAATCGTGTGGGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCAC
AAAGTGACAGTGAATGATGGAGGGGGAGTTCTCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATG
AATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGTTTTATATATACTATTCAGGGTAAGTTTGCTAGTTG
A

Translation (326 aa):
MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPAGGVSLLLPRLECNGAVSAHPNLHLPGSRDSPAS
ASQVAGITDQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLLQHPTLSQRVLVKFIIGAHGC
EVPVEDREDPYSCKLLNITNPVLNQEIEAFSLSEDTSSGLPEDRVVSVSFRVLYPIVITSLGVFYDANDV
GFQRNITVKLYQAEQEEALFIARFSPPSCGVQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLH
KVTVNDGGGVLRVITAGEGALPHEFLEGVEGVAGGFIYTIQGKFAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH