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Report for CCDS175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
175.1 Public Homo sapiens 1 ATP13A2 24 110 108 CCDS HistoryNCBI Gene:23400Re-query CCDS DB by CCDS ID:175.1Re-query CCDS DB by GeneID:23400See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 175.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326735.13 ENSP00000327214.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326735.13Link to Ensembl Protein Viewer:ENSP00000327214.8Re-query CCDS DB by Nucleotide ID:ENST00000326735Re-query CCDS DB by Protein ID:ENSP00000327214
Original member Current member NCBI NM_022089.4 NP_071372.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022089.4Link to Protein Sequence:NP_071372.1Re-query CCDS DB by Nucleotide ID:NM_022089Re-query CCDS DB by Protein ID:NP_071372Link to BLAST:NP_071372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071372.1 1180 Q9NQ11-1 1180 100% 0 0

Chromosomal Locations for CCDS 175.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16986221 16986358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16986463 16986632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16986805 16986956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16987046 16987269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16988138 16988234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16988322 16988474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16989691 16989770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16989887 16990003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16990127 16990287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16991734 16991858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16992009 16992129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16992243 16992402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16992486 16992581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16993629 16993835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16995976 16996164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16996254 16996300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16996386 16996496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16997020 16997175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17000011 17000142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17000246 17000312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17000400 17000534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17002034 17002103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17002296 17002373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17004332 17004411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17004692 17004821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17005014 17005072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17005374 17005556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17005684 17005778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17011729 17011738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3543 nt):
ATGAGCGCAGACAGCAGCCCTCTCGTGGGCAGCACGCCCACCGGTTATGGGACCCTGACGATAGGGACAT
CAATAGATCCCCTCAGCTCCTCAGTTTCATCCGTGAGGCTCAGCGGCTACTGTGGCAGTCCATGGAGGGT
CATCGGCTATCACGTCGTGGTCTGGATGATGGCTGGGATCCCTTTGCTGCTCTTCCGTTGGAAGCCCCTG
TGGGGGGTGCGGCTGCGGCTCCGGCCCTGCAACCTGGCCCACGCCGAAACACTCGTTATCGAAATAAGAG
ACAAAGAGGATAGTTCCTGGCAGCTCTTCACTGTCCAGGTGCAGACTGAGGCCATCGGCGAGGGCAGCCT
GGAGCCGTCCCCACAGTCCCAGGCAGAGGATGGCCGGAGCCAGGCGGCAGTTGGGGCGGTACCAGAGGGT
GCCTGGAAGGATACGGCCCAGCTCCACAAGAGCGAGGAGGCGGTGAGTGTCGGACAGAAGCGGGTGCTGC
GGTATTACCTCTTCCAGGGCCAGCGCTATATCTGGATCGAGACCCAGCAAGCCTTCTACCAGGTCAGCCT
CCTGGACCATGGCCGCTCTTGTGACGACGTCCACCGCTCCCGCCATGGCCTCAGCCTCCAGGACCAAATG
GTGAGGAAGGCCATTTACGGCCCCAACGTGATCAGCATACCGGTCAAGTCCTACCCCCAGCTGCTGGTGG
ACGAGGCACTGAACCCCTACTATGGGTTCCAGGCCTTCAGCATCGCGCTGTGGCTGGCTGACCACTACTA
CTGGTACGCCCTGTGCATCTTCCTCATTTCCTCCATCTCCATCTGCCTGTCGCTGTACAAGACCAGAAAG
CAAAGCCAGACTCTAAGGGACATGGTCAAGTTGTCCATGCGGGTGTGCGTGTGCCGGCCAGGGGGAGAGG
AAGAGTGGGTGGACTCCAGTGAGCTAGTGCCCGGAGACTGCCTGGTGCTGCCCCAGGAGGGTGGGCTGAT
GCCCTGTGATGCCGCCCTGGTGGCCGGCGAGTGCATGGTGAATGAGAGCTCTCTGACAGGAGAGAGCATT
CCAGTGCTGAAGACGGCACTGCCGGAGGGGCTGGGGCCCTACTGTGCAGAGACACACCGGCGGCACACAC
TCTTCTGCGGGACCCTCATCTTGCAGGCCCGGGCCTATGTGGGACCGCACGTCCTGGCAGTGGTGACCCG
CACAGGGTTCTGCACGGCAAAAGGGGGCCTGGTGAGCTCCATCTTGCACCCCCGGCCCATCAACTTCAAG
TTCTATAAACACAGCATGAAGTTTGTGGCTGCCCTCTCTGTCCTGGCTCTCCTCGGCACCATCTACAGCA
TCTTCATCCTCTACCGAAACCGGGTGCCTCTGAATGAGATTGTAATCCGGGCTCTCGACCTGGTGACCGT
GGTGGTGCCACCTGCCCTGCCTGCTGCCATGACTGTGTGCACGCTCTACGCCCAGAGCCGACTGCGGAGA
CAGGGCATTTTCTGCATCCACCCACTGCGCATCAACCTGGGGGGCAAGCTGCAGCTGGTGTGTTTCGACA
AGACGGGCACCCTCACTGAGGACGGCTTAGACGTGATGGGGGTGGTGCCCCTGAAGGGGCAGGCATTCCT
GCCCCTGGTCCCAGAGCCTCGCCGCCTGCCTGTGGGGCCCCTGCTCCGAGCACTGGCCACCTGCCATGCC
CTCAGCCGGCTCCAGGACACCCCCGTGGGCGACCCCATGGACTTGAAGATGGTGGAGTCTACTGGCTGGG
TCCTGGAGGAAGAGCCGGCTGCAGACTCAGCATTTGGGACCCAGGTCTTGGCAGTGATGAGACCCCCACT
TTGGGAGCCCCAGCTGCAGGCAATGGAGGAGCCCCCGGTGCCAGTCAGCGTCCTCCACCGCTTCCCCTTC
TCTTCGGCTCTGCAGCGCATGAGTGTGGTGGTGGCGTGGCCAGGGGCCACTCAGCCCGAGGCCTACGTCA
AAGGCTCCCCGGAGCTGGTGGCAGGGCTCTGCAACCCCGAGACAGTGCCCACCGACTTCGCCCAGATGCT
GCAGAGCTATACAGCTGCTGGCTACCGTGTCGTGGCCCTGGCCAGCAAGCCACTGCCCACTGTGCCCAGC
CTGGAGGCAGCCCAGCAACTGACGAGGGACACTGTGGAAGGAGACCTGAGCCTCCTGGGGCTGCTGGTCA
TGAGGAACCTACTGAAGCCGCAGACAACGCCAGTTATCCAGGCTCTGCGAAGGACCCGCATCCGCGCCGT
CATGGTGACAGGGGACAACCTGCAGACAGCGGTGACTGTGGCCCGGGGCTGTGGCATGGTGGCCCCCCAG
GAGCATCTGATCATCGTCCACGCCACCCACCCTGAGCGGGGTCAGCCTGCCTCTCTCGAGTTCCTGCCGA
TGGAGTCCCCCACAGCCGTGAATGGCGTTAAGGATCCTGACCAGGCTGCAAGCTACACCGTGGAGCCAGA
CCCCCGATCCAGGCACCTGGCCCTCAGCGGGCCCACCTTTGGTATCATTGTGAAGCACTTCCCCAAGCTG
CTGCCCAAGGTCCTGGTCCAGGGCACTGTCTTTGCCCGCATGGCCCCTGAGCAGAAGACAGAGCTGGTGT
GCGAGCTACAGAAGCTTCAGTACTGCGTGGGCATGTGCGGAGACGGCGCCAATGACTGTGGGGCCCTGAA
GGCGGCTGATGTCGGCATCTCGCTGTCCCAGGCAGAAGCCTCAGTGGTCTCACCCTTCACCTCGAGCATG
GCCAGTATTGAGTGCGTGCCCATGGTCATCAGGGAGGGGCGCTGTTCCCTTGACACTTCGTTCAGCGTCT
TCAAGTACATGGCTCTGTACAGCCTGACCCAGTTCATCTCCGTCCTGATCCTCTACACGATCAACACCAA
CCTGGGTGACCTGCAGTTCCTGGCCATCGACCTGGTCATCACCACCACAGTGGCAGTGCTCATGAGCCGC
ACGGGGCCAGCGCTGGTCCTGGGACGGGTGCGGCCACCGGGGGCGCTGCTCAGCGTGCCCGTGCTCAGCA
GCCTGCTGCTGCAGATGGTCCTGGTGACCGGCGTGCAGCTAGGGGGCTACTTCCTGACCCTGGCCCAGCC
ATGGTTCGTGCCTCTGAACAGGACAGTGGCCGCACCAGACAACCTGCCCAACTACGAGAACACCGTGGTC
TTCTCTCTGTCCAGCTTCCAGTACCTCATCCTGGCTGCAGCCGTGTCCAAGGGGGCGCCCTTCCGCCGGC
CGCTCTACACCAATGTGCCCTTCCTGGTGGCCCTGGCGCTCCTGAGCTCCGTCCTGGTGGGCCTTGTCCT
GGTCCCCGGCCTCCTGCAGGGGCCGCTGGCGCTGAGGAACATCACTGACACCGGCTTCAAGCTGCTGCTG
CTGGGTCTGGTCACCCTCAACTTCGTGGGGGCCTTCATGCTGGAGAGCGTGCTAGACCAGTGCCTCCCCG
CCTGCCTGCGCCGCCTCCGGCCCAAGCGGGCCTCCAAGAAGCGCTTCAAGCAGCTGGAACGAGAGCTGGC
CGAGCAGCCCTGGCCGCCGCTGCCCGCCGGCCCCCTGAGGTAG

Translation (1180 aa):
MSADSSPLVGSTPTGYGTLTIGTSIDPLSSSVSSVRLSGYCGSPWRVIGYHVVVWMMAGIPLLLFRWKPL
WGVRLRLRPCNLAHAETLVIEIRDKEDSSWQLFTVQVQTEAIGEGSLEPSPQSQAEDGRSQAAVGAVPEG
AWKDTAQLHKSEEAVSVGQKRVLRYYLFQGQRYIWIETQQAFYQVSLLDHGRSCDDVHRSRHGLSLQDQM
VRKAIYGPNVISIPVKSYPQLLVDEALNPYYGFQAFSIALWLADHYYWYALCIFLISSISICLSLYKTRK
QSQTLRDMVKLSMRVCVCRPGGEEEWVDSSELVPGDCLVLPQEGGLMPCDAALVAGECMVNESSLTGESI
PVLKTALPEGLGPYCAETHRRHTLFCGTLILQARAYVGPHVLAVVTRTGFCTAKGGLVSSILHPRPINFK
FYKHSMKFVAALSVLALLGTIYSIFILYRNRVPLNEIVIRALDLVTVVVPPALPAAMTVCTLYAQSRLRR
QGIFCIHPLRINLGGKLQLVCFDKTGTLTEDGLDVMGVVPLKGQAFLPLVPEPRRLPVGPLLRALATCHA
LSRLQDTPVGDPMDLKMVESTGWVLEEEPAADSAFGTQVLAVMRPPLWEPQLQAMEEPPVPVSVLHRFPF
SSALQRMSVVVAWPGATQPEAYVKGSPELVAGLCNPETVPTDFAQMLQSYTAAGYRVVALASKPLPTVPS
LEAAQQLTRDTVEGDLSLLGLLVMRNLLKPQTTPVIQALRRTRIRAVMVTGDNLQTAVTVARGCGMVAPQ
EHLIIVHATHPERGQPASLEFLPMESPTAVNGVKDPDQAASYTVEPDPRSRHLALSGPTFGIIVKHFPKL
LPKVLVQGTVFARMAPEQKTELVCELQKLQYCVGMCGDGANDCGALKAADVGISLSQAEASVVSPFTSSM
ASIECVPMVIREGRCSLDTSFSVFKYMALYSLTQFISVLILYTINTNLGDLQFLAIDLVITTTVAVLMSR
TGPALVLGRVRPPGALLSVPVLSSLLLQMVLVTGVQLGGYFLTLAQPWFVPLNRTVAAPDNLPNYENTVV
FSLSSFQYLILAAAVSKGAPFRRPLYTNVPFLVALALLSSVLVGLVLVPGLLQGPLALRNITDTGFKLLL
LGLVTLNFVGAFMLESVLDQCLPACLRRLRPKRASKKRFKQLERELAEQPWPPLPAGPLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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