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Report for CCDS29964.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29964.2 Public Mus musculus X Ppp1r3f 23 108 98 CCDS HistoryNCBI Gene:54646Re-query CCDS DB by CCDS ID:29964.2Re-query CCDS DB by GeneID:54646See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 29964.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in some species.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29964.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115742.8 ENSMUSP00000111407.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115742.8Link to Ensembl Protein Viewer:ENSMUSP00000111407.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115742Re-query CCDS DB by Protein ID:ENSMUSP00000111407
Original member NCBI NM_138605.3 NP_613071.3 Updated not alive Link to Nucleotide Sequence:NM_138605.3Link to Protein Sequence:NP_613071.3Re-query CCDS DB by Nucleotide ID:NM_138605Re-query CCDS DB by Protein ID:NP_613071
Current member NCBI NM_138605.4 NP_613071.3 Accepted alive Link to Nucleotide Sequence:NM_138605.4Link to Protein Sequence:NP_613071.3Re-query CCDS DB by Nucleotide ID:NM_138605Re-query CCDS DB by Protein ID:NP_613071Link to BLAST:NP_613071.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613071.3 799 Q9JIG4-1 799 100% 0 0

Chromosomal Locations for CCDS 29964.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7559618 7560883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7563862 7563941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7564236 7564288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7573248 7574248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGGCGCGCACGGCCCCTGTGGAGCCACCGCTGCGGCATCCCGCGCCCCCGTCGCCGGCTGCGGGAGAGC
CC
CGCGCCTCGGCTGAGGCGGCGGTGGCCCCGCGGAGGGTGCTGTTCGCTGACGAGGCCCTGGGGCTGCC
T
CTGGCGCAGCTACGCCGCTACCGGCCGTGGGGCGGGCCCGGGGCGGGCAAGATGGCGGCGGCGACCGGG
CAA
GATGGCGGCGGTGGCGGGGCTGATGAGGAAGACGATGGCGAGGATGGGGATGAAGGGGAGGAGGAAG
AG
GAGGCTTTTCCCGATCCCTCTCCGCCGTGCCCCGTTCCCGCTGGCGGGGGGTTTTACCTGGTGCCCAC
A
TTTTCGTTGCCGCCCGCGCTGGGCCGTCTGGAGCGGTTGGGGCGCGTGATGGTGGAGTTGGAGGCGCTG
CTG
CCGCCTCCTGGAGCGGTTCCCGGGGGTTCCGGGGTGTGGGTGCCTGGGGGACGCCCGCCAGTGGTGC
GC
GGGTTGGTGCGCGTGCTGAACCGCTCCTTCGAGAAGGCGGTGCACGTGCGGGCCTCACACGACGGTTG
G
GCTACCTTCTGCGACCACCCAGCCCGCTATGTCCCACGCAGCCCGCCTGGGGCAGGAGTGGGAGGAACA
GGA
GCAGGAGATCCCCTCCTGGATCCCGGGCTAGGCCTGGGCCCTGGCCAGATGTCAGCCTCCTCACCCG
AC
GACGGTGGCTGCACTGACCGCTTTGCCTTCCAGCTGCCCTTTGCTGAGGGCGCGAGCGATGGGGCGCG
C
CTCGACTTCGTGGTGCGCTATGAGACCCCCGAGGGCACTTTCTGGGCCAACAACCATGGCCGCAACTAC
ACT
GTCCTGCTCCGGATCGCACCCGCTCCCACACCCACTGATGCCGAAGGGCTGCCCCAGCAGCAGCAGC
TG
CAGCAGCTGGAGCCACAGCCTGAGTGCCAGGGTCCTGTGGAGGCTGAGGCCAGGCAGCTGAAGAGCTG
C
ATGAAGCCGGTGAGGCGCAGGCCTTTTGAAGAAGAGCCAAGGATGAGGAGTGCGGACGATAATACCCTA
GCA
GAACATCCTGATGTTCGAGAGTCACTAGGTCCCCTGTTGGCCCCTACCCCTCTCCGTCCATGGCCCC
AG
ATGACACTTCAGGTGCCCGAAGTTATGTTGACCAGCAACCCTCAAGAAGAAGGTGACATCCCCAGAAG
C
AACCCACCTGTGGCTTTTACAGAGGTCCGCCAGGCACCTGCCATCAGGATTCTTCCAGCAACCTGTGGC
CTG
GGTGGCCCCCCAAGGGACCAGGCCTCAGGGCCCGATGCAAGTGATAGAGCTGCTGGCTCCTTCCTGG
AA
CCCACCCAGCAGCAGGTGGAGGCTGCGTGGGAAAGTGGAGGGGGTCGAAAGGCCCCTATGGTAGGGGC
T
CTGACAGATGAGCCCGCCAGGGGTCTGGAGATTGTGAGTGGCTTGGATGAGTTGCTTGGTGAAGACACC
ATT
GACCAGGAGTTGGAGCAGCTCTACCTGTCTCACCTGAGCCGCTTGAGAGCTGTGGCAGCGGCGGGTG
GC
GGGGAAGGCACTTCCCCCACTCATGCCCTGGGCATACTCACAGACCGTGACCTGATCTTGAAGTGGCC
T
GGCCCCGAGAGGGCCCTGAACAGTGCTCTGGCCGAGGAGATCACGCTGCACTATGCGCGCCTGGGCTGT
GGC
GTGGAGCTCATCAAGGACACTGAAGACCCAGATGACGAGGGGGAGGGTGAAGATGGGCTCTCCATCA
CT
CCTTCTAGCCCTGAAGGGGGCAGCCCTAAGGAATCGCCTCCAGAAATCCTCTCTGGAGCCCGCTCTGT
G
ATAGCTACTATGGGAGATGTGTGGGTTCCATGGGCAGAGCGCTCTAGCTCTAGATGTGATAGCCCAGTG
GTT
CTGGGAACACAGGGTCAGTTCACTGAGAATCCAGAGAAAGGGATGGGCAAGGACACCAAGTCTCTGC
AC
CTGAATAGGGTAATAGTTGGGATGAGCAAGTCCCCTGGGGAGGCTGGGACGGAAAGCCAGATGGAGGA
G
CTACCTACTGAGCGGGAAAGCAGCTGGGTACCTAGTTCTGAGAAAGAGCTGCCTCTACCAGTCCAGCAA
GAG
CAGAGTCCTGCCCTCCTTGGTCCCACAGGGACTGAAGTCTGTCTGTCTAGTGTAGCCAAGCCTCATG
TG
AACTCCCAGGAAGAAGAGGGTGGAAGCCTGAATCTTGAGTCCCCAAAGAGGTCTCCCATGCCAGCGGC
C
CCTGCAGAATGTGCGTGTGGGTTGGCTCCTCAGCTCTGGGGGCCCTTGACCCAAACTTTGGGTGTACTG
GCT
GGGCTCGTTATGGTCCCCGTGGCTTTGAACAGCGGTGTGTCCCTTCTGGTGCTGGTGCTGTGCCTCT
CT
CTGGCCTGGTTCTCGTAG


Translation (799 aa):
MARTAPVEPPLRHPAPPSPAAGEPRASAEAAVAPRRVLFADEALGLPLAQLRRYRPWGGPGAGKMAAATG
Q
DGGGGGADEEDDGEDGDEGEEEEEAFPDPSPPCPVPAGGGFYLVPTFSLPPALGRLERLGRVMVELEAL
L
PPPGAVPGGSGVWVPGGRPPVVRGLVRVLNRSFEKAVHVRASHDGWATFCDHPARYVPRSPPGAGVGGT
G
AGDPLLDPGLGLGPGQMSASSPDDGGCTDRFAFQLPFAEGASDGARLDFVVRYETPEGTFWANNHGRNY
T
VLLRIAPAPTPTDAEGLPQQQQLQQLEPQPECQGPVEAEARQLKSCMKPVRR
RPFEEEPRMRSADDNTL
A
EHPDVRESLGPLLAPTPLRPWPQMTLQVPEVMLTSNPQEEGDIPRSNPPVAFTEVRQAPAIRILPATCG
L
GGPPRDQASGPDASDRAAGSFLEPTQQQVEAAWESGGGRKAPMVGALTDEPARGLEIVSGLDELLGEDT
I
DQELEQLYLSHLSRLRAVAAAGGGEGTSPTHALGILTDRDLILKWPGPERALNSALAEEITLHYARLGC
G
VELIKDTEDPDDEGEGEDGLSITPSSPEGGSPKESPPEILSGARSVIATMGDVWVPWAERSSSRCDSPV
V
LGTQGQFTENPEKGMGKDTKSLHLNRVIVGMSKSPGEAGTESQMEELPTERESSWVPSSEKELPLPVQQ
E
QSPALLGPTGTEVCLSSVAKPHVNSQEEEGGSLNLESPKRSPMPAAPAECACGLAPQLWGPLTQTLGVL
A
GLVMVPVALNSGVSLLVLVLCLSLAWFS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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