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Report for CCDS52734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52734.1 Public Mus musculus 9 Ap1m2 23 108 98 CCDS HistoryNCBI Gene:11768Re-query CCDS DB by CCDS ID:52734.1Re-query CCDS DB by GeneID:11768See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52734.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115433.10 ENSMUSP00000111093.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115433.10Link to Ensembl Protein Viewer:ENSMUSP00000111093.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115433Re-query CCDS DB by Protein ID:ENSMUSP00000111093
Original member NCBI NM_001110300.1 NP_001103770.1 Updated not alive Link to Nucleotide Sequence:NM_001110300.1Link to Protein Sequence:NP_001103770.1Re-query CCDS DB by Nucleotide ID:NM_001110300Re-query CCDS DB by Protein ID:NP_001103770
Current member NCBI NM_001110300.2 NP_001103770.1 Accepted alive Link to Nucleotide Sequence:NM_001110300.2Link to Protein Sequence:NP_001103770.1Re-query CCDS DB by Nucleotide ID:NM_001110300Re-query CCDS DB by Protein ID:NP_001103770Link to BLAST:NP_001103770.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103770.1 425 Q9WVP1-2 425 99.7647% 0 1

Chromosomal Locations for CCDS 52734.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21295832 21295854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21296433 21296508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21298200 21298325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21299279 21299437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21302456 21302527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21302623 21302771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21305282 21305408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21305493 21305771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21309367 21309434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21309636 21309792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21312207 21312248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGTCGGCCTCGGCAGTCTTCATTCTGGACGTCAAGGGCAAGCCTCTGATTAGCCGAAACTACAAAGGTG
ATGTGCCCATGACAGAGATTGACCACTTCATGCCGCTGCTTATGCAGCGTGAGGAGGAGGGCGTGCTGGC
CCCGCTGCTGAGCCACGGCCGAGTGCACTTCCTGTGGATCAAACACAGCAACCTCTACTTGGTGGCCACC
ACGCTGAAGAACGCTAATGCCTCTCTGGTGTACTCCTTTCTGTACAAGACTGTGGAGGTCTTCTGCGAGT
ACTTTAAGGAGCTGGAGGAGGAGAGCATCCGGGACAACTTCGTCATCGTGTACGAGCTGCTGGATGAGCT
CATGGACTTCGGCTTTCCGCAGACCACAGACAGCAAGATCCTGCAGGAGTACATCACACAACAGGGCAAC
AAGCTGGAGACTGGCAAATCTCGTGTACCACCTACAGTCACCAATGCGGTGTCGTGGCGCTCTGAGGGCA
TTAAGTACAAAAAGAATGAGGTCTTCATTGATGTCATTGAGTCTGTCAACCTTCTGGTCAATGCTAATGG
GAGTGTCTTGCTCAGCGAGATTGTGGGCACCATCAAGCTGAAGGTGTTTCTGTCTGGGATGCCAGAGCTG
CGGCTGGGCCTCAATGACCGAGTGCTCTTTGAGCTTACTGGCCTTTCAGGCAGCAAGAACAAGTCTGTGG
AACTGGAAGATGTGAAATTCCACCAATGTGTGAGGCTTTCACGCTTTGACAACGACCGAACCATCTCCTT
CATACCCCCAGATGGGGACTTTGAACTCATGTCCTACCGGCTTAGCACCCAGGTCAAACCCCTGATCTGG
ATCGAGTCAGTCATTGAGAAATTCTCGCACAGCCGAGTGGAGATCATGGTGAAGGCCAAGGGTCAGTTTA
AGAAGCAGTCGGTGGCCAATGGCGTGGAAATCTCTGTGCCCGTTCCTAGTGATGCAGACTCTCCGCGCTT
CAAGACCAGTGTGGGCAGTGCCAAGTATGTGCCTGAGAAGAATGTTGTCATCTGGAGCATCAAGTCATTC
CCTGGGGGAAAGGAGTACTTGATGCGTGCCCACTTTGGCCTCCCCAGCGTGGAAACTGAGGAGGTAGAGG
GCCGACCACCCATCGGGGTCAAGTTTGAGATTCCATACTTTACCGTTTCTGGCATCCAGGTCCGTTACAT
GAAGATCATCGAGAAAAGTGGGTACCAGGCCCTGCCCTGGGTCCGTTACATCACGCAGAGTGGTGATTAT
CAACTTCGTACCAGCTAG

Translation (425 aa):
MSASAVFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWIKHSNLYLVAT
TLKNANASLVYSFLYKTVEVFCEYFKELEEESIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQGN
KLETGKSRVPPTVTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPEL
RLGLNDRVLFELTGLSGSKNKSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDFELMSYRLSTQVKPLIW
IESVIEKFSHSRVEIMVKAKGQFKKQSVANGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSIKSF
PGGKEYLMRAHFGLPSVETEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDY
QLRTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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