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Report for CCDS40098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40098.1 Public Mus musculus 7 Sox6 23 108 98 CCDS HistoryNCBI Gene:20679Re-query CCDS DB by CCDS ID:40098.1Re-query CCDS DB by GeneID:20679See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072804.10 ENSMUSP00000072583.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072804.10Link to Ensembl Protein Viewer:ENSMUSP00000072583.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072804Re-query CCDS DB by Protein ID:ENSMUSP00000072583
Original member Current member EBI ENSMUST00000166207.2 ENSMUSP00000129027.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166207.2Link to Ensembl Protein Viewer:ENSMUSP00000129027.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166207Re-query CCDS DB by Protein ID:ENSMUSP00000129027
Original member NCBI NM_001277326.1 NP_001264255.1 Updated not alive Link to Nucleotide Sequence:NM_001277326.1Link to Protein Sequence:NP_001264255.1Re-query CCDS DB by Nucleotide ID:NM_001277326Re-query CCDS DB by Protein ID:NP_001264255
Current member NCBI NM_001277326.2 NP_001264255.1 Accepted alive Link to Nucleotide Sequence:NM_001277326.2Link to Protein Sequence:NP_001264255.1Re-query CCDS DB by Nucleotide ID:NM_001277326Re-query CCDS DB by Protein ID:NP_001264255Link to BLAST:NP_001264255.1
Original member NCBI NM_011445.4 NP_035575.1 Updated not alive Link to Nucleotide Sequence:NM_011445.4Link to Protein Sequence:NP_035575.1Re-query CCDS DB by Nucleotide ID:NM_011445Re-query CCDS DB by Protein ID:NP_035575
Current member NCBI NM_011445.5 NP_035575.1 Accepted alive Link to Nucleotide Sequence:NM_011445.5Link to Protein Sequence:NP_035575.1Re-query CCDS DB by Nucleotide ID:NM_011445Re-query CCDS DB by Protein ID:NP_035575Link to BLAST:NP_035575.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264255.1 827 P40645-1 827 100% 0 0
NP_035575.1 827 P40645-1 827 100% 0 0

Chromosomal Locations for CCDS 40098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 115476918 115477221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115486548 115486764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115489663 115489896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115512661 115512769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115541622 115541806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115544470 115544653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115550010 115550159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115579016 115579138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115580565 115580644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115597496 115597616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115659516 115659584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115662272 115662444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115701696 115701785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115777051 115777258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 115801369 115801605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2484 nt):
ATGTCTTCCAAGCAAGCCACCTCTCCATTTGCCTGTACAGCGGATGGAGAGGAAGCAATGACCCAGGACT
TGACCTCAAGGGAAAAGGAAGAGGGCAGTGATCAACACCCGGCCTCCCATCTGCCTCTGCACCCCATAAT
GCACAACAAACCTCACTCTGAGGAGCTGCCTACACTTGTCAGTACCATTCAACAAGATGCTGACTGGGAC
AGCGTTCTGTCATCTCAGCAAAGAATGGAGTCAGAGAATAATAAGTTATGTTCCCTATATTCCTTCCGAA
ATACGTCTACCTCACCACATAAGCCTGACGAAGGGAGTCGGGAGCGTGAAATAATGAACAGTGTTACTTT
TGGAACCCCGGAACGCCGCAAAGGGAGCCTTGCCGATGTGGTGGATACGCTGAAGCAGAAGAAGCTGGAG
GAGATGACTCGGACAGAACAAGAGGATTCCTCCTGCATGGAAAAACTACTTTCAAAAGATTGGAAGGAAA
AAATGGAAAGACTAAATACGAGTGAACTTCTTGGAGAAATCAAAGGTACACCTGAGAGCCTTGCAGAGAA
AGAACGGCAACTCTCCACCATGATTACCCAGCTGATCAGCTTGCGGGAGCAGCTCCTGGCAGCCCATGAT
GAACAGAAAAAGCTGGCAGCATCGCAGATCGAGAAACAGCGGCAGCAAATGGACCTTGCTCGCCAACAGC
AAGAACAGATCGCAAGACAACAGCAGCAACTTCTACAGCAGCAGCACAAGATTAATCTCCTGCAGCAACA
GATCCAGGTTCAGGGGCACATGCCTCCGCTCATGATCCCAATTTTTCCACATGACCAGCGGACCTTGGCA
GCAGCTGCTGCTGCCCAACAGGGATTCCTCTTCCCCCCTGGAATAACATACAAGCCAGGTGATAACTACC
CCGTACAGTTCATTCCGTCAACAATGGCAGCTGCTGCTGCTTCTGGACTCAGCCCTTTACAGCTTCAGAA
GGGTCATGTTTCCCACCCACAAATTAACCCAAGGCTAAAGGGCATAAGTGACCGTTTTGGCAGGAATTTG
GACCCCTCTGAACATGGTGGTGGCCACTCTTACAACCACAGACAGATTGAGCAGCTCTATGCCGCTCAGC
TGGCCAGCATGCAGGTGTCACCTGGAGCAAAGATGCCATCAACTCCACAGCCACCAAACTCGGCAGGGGC
AGTCTCACCTACTGGGATAAAAAATGAAAAGAGAGGGACCAGCCCTGTAACTCAAGTTAAGGATGAAACA
ACAGCCCAGCCGCTGAATCTCTCATCCCGGCCTAAGACAGCAGAGCCTGTGAAGTCCCCAACATCTCCCA
CCCAGAACCTCTTCCCAGCCAGCAAAACCAGCCCTGTCAACCTGCCAAACAAAAGCAGCATCCCCAGCCC
CATTGGAGGAAGCCTGGGGAGAGGATCCTCTCTAGATATACTATCCAGTCTCAACTCTCCTGCCCTGTTT
GGGGACCAGGACACAGTGATGAAAGCCATTCAGGAGGCTCGGAAGATGCGAGAACAGATCCAGCGGGAGC
AACAACAGCAGCCACACGGAGTTGATGGGAAACTGTCCTCCATGAACAACATGGGGCTGAGCAACTGCAG
GACTGAGAAGGAAAGAACACGCTTTGAGAACCTGGGTCCCCAATTAACAGGAAAGTCAAGTGAAGATGGA
AAACTGGGCCCGGGTGTCATCGATCTCACTCGGCCAGAGGACGCAGAAGGAAGCAAAGCAATGAATGGCT
CTGCAGCTAAACTACAGCAGTATTATTGTTGGCCAACAGGAGGCGCCACTGTGGCTGAAGCCCGTGTCTA
CAGGGATGCCCGCGGCCGTGCCAGCAGCGAACCCCACATCAAGCGACCAATGAATGCGTTCATGGTTTGG
GCAAAGGACGAAAGGAGGAAAATTCTTCAGGCCTTCCCTGACATGCATAACTCCAACATTAGCAAAATCT
TAGGATCTCGCTGGAAATCCATGTCCAACCAGGAGAAGCAACCTTACTATGAAGAACAGGCCCGGCTAAG
CAAAATCCACCTAGAGAAGTACCCAAACTACAAGTACAAACCCCGGCCGAAGCGCACATGCATCGTGGAT
GGCAAGAAGCTCCGGATTGGGGAGTACAAGCAACTGATGCGCTCGCGAAGGCAGGAGATGCGACAGTTCT
TCACTGTGGGGCAACAGCCTCAGATGCCCATCACCACAGGAACAGGTGTTGTGTATCCTGGTGCTATTAC
TATGGCAACGACCACACCATCACCTCAGATGACATCTGACTGCTCTAGCACCTCTGCCAGCCCCGAGCCC
AGCCTCCCTGTCATCCAGAGCACGTATGGTATGAAGATGGACGGCGCAAGCCTGGCTGGGAACGACATGA
TTAATGGAGAGGATGAAATGGAAGCCTATGACGACTACGAAGATGATCCCAAATCAGACTATAGCAGCGA
GAATGAGGCCCCAGAGCCTGTCAGTGCCAACTGA

Translation (827 aa):
MSSKQATSPFACTADGEEAMTQDLTSREKEEGSDQHPASHLPLHPIMHNKPHSEELPTLVSTIQQDADWD
SVLSSQQRMESENNKLCSLYSFRNTSTSPHKPDEGSREREIMNSVTFGTPERRKGSLADVVDTLKQKKLE
EMTRTEQEDSSCMEKLLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHD
EQKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFPHDQRTLA
AAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQKGHVSHPQINPRLKGISDRFGRNL
DPSEHGGGHSYNHRQIEQLYAAQLASMQVSPGAKMPSTPQPPNSAGAVSPTGIKNEKRGTSPVTQVKDET
TAQPLNLSSRPKTAEPVKSPTSPTQNLFPASKTSPVNLPNKSSIPSPIGGSLGRGSSLDILSSLNSPALF
GDQDTVMKAIQEARKMREQIQREQQQQPHGVDGKLSSMNNMGLSNCRTEKERTRFENLGPQLTGKSSEDG
KLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMVW
AKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVD
GKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQMPITTGTGVVYPGAITMATTTPSPQMTSDCSSTSASPEP
SLPVIQSTYGMKMDGASLAGNDMINGEDEMEAYDDYEDDPKSDYSSENEAPEPVSAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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