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Report for CCDS51961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51961.1 Public Mus musculus 6 Amn1 23 108 98 CCDS HistoryNCBI Gene:232566Re-query CCDS DB by CCDS ID:51961.1Re-query CCDS DB by GeneID:232566See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111535.7 ENSMUSP00000107160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111535.7Link to Ensembl Protein Viewer:ENSMUSP00000107160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111535Re-query CCDS DB by Protein ID:ENSMUSP00000107160
Original member Current member NCBI NM_001113424.1 NP_001106895.1 Accepted alive Link to Nucleotide Sequence:NM_001113424.1Link to Protein Sequence:NP_001106895.1Re-query CCDS DB by Nucleotide ID:NM_001113424Re-query CCDS DB by Protein ID:NP_001106895Link to BLAST:NP_001106895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106895.1 258 B8JKV0 258 100% 0 0

Chromosomal Locations for CCDS 51961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149157758 149157831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149166806 149166917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149169448 149169504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149170833 149171050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149183394 149183538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149184992 149185124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149188606 149188643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGCCTTTGTCCGGAGTAGTCAGTCAGCTCCTGGAACTATGTCTTCAGTACCTAGTAATCAATATTTCCA
GATATATATCAGATATTAAATATTTGCCTTCCAACATTAAAGATAGACTAATTAAAATAATGAGCATTCG
GGGTCGGATAACAGATTCCAATATAAGTGAGGTGTTACATCCTGAAGTTCAAAGACTAGATCTGAGGAGC
TGTGATATCTCAGATGTGGCTCTCCAGCACCTGTGTAAGTGCAGAAAACTGAAGGCACTAAATCTAAAAT
CCTGCAGAGAACATAGAAATAGCATAACTTCAGAAGGAATAAAAGCTGTGGCTTCATCCTGTTCAGACCT
TCATGAAATTTATTTGAAAGGATGTTGCAGTGTCACTGATGAAGGAGTCCTTGCTCTTGCACTCAATTGT
CATCTGCTAAAGATCATTGATTTGGGTGGCTGCTTAGGTATTACTGATGTGTCCTTACATGCATTAGGAA
AAAACTGCCCATTTCTGCAGTGTGTTGACATTTCAACTACGCAGGTATCTGACAATGGTGTGGTTGCACT
TGTTAGTGGACCATGTGCCAAACAATTAGAGGAGATTAACATGAGATACTGTATAAATCTAACTGATAAG
GCTGTAGAAGCTGCTCTGACTGCATGTCCTCGGATATGTATACTTCTTTTCCATGGCTGCCCCCTGATAA
CAGATCGTTCACAAGAAGTCTTGGAGCAATTAATAGGATCAAGAAAACTAAAGCAAGTGACTTGGTCTGT
TTATTGA

Translation (258 aa):
MPLSGVVSQLLELCLQYLVINISRYISDIKYLPSNIKDRLIKIMSIRGRITDSNISEVLHPEVQRLDLRS
CDISDVALQHLCKCRKLKALNLKSCREHRNSITSEGIKAVASSCSDLHEIYLKGCCSVTDEGVLALALNC
HLLKIIDLGGCLGITDVSLHALGKNCPFLQCVDISTTQVSDNGVVALVSGPCAKQLEEINMRYCINLTDK
AVEAALTACPRICILLFHGCPLITDRSQEVLEQLIGSRKLKQVTWSVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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