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Report for CCDS51546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51546.1 Public Mus musculus 5 Art3 23 108 98 CCDS HistoryNCBI Gene:109979Re-query CCDS DB by CCDS ID:51546.1Re-query CCDS DB by GeneID:109979See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113083.8 ENSMUSP00000108706.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113083.8Link to Ensembl Protein Viewer:ENSMUSP00000108706.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113083Re-query CCDS DB by Protein ID:ENSMUSP00000108706
Original member Current member NCBI NM_181728.3 NP_859417.2 Accepted alive Link to Nucleotide Sequence:NM_181728.3Link to Protein Sequence:NP_859417.2Re-query CCDS DB by Nucleotide ID:NM_181728Re-query CCDS DB by Protein ID:NP_859417Link to BLAST:NP_859417.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859417.2 361 Q8R2G4-8 361 100% 0 0

Chromosomal Locations for CCDS 51546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92388143 92388211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92392469 92393177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92401996 92402028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92403595 92403627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92404837 92404866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92409270 92409302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92411142 92411195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92414242 92414366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGAAGATGGGACATTTTGAAATGGTCACCACGCTGCTGGCAGCCGCAGTTCTAATGGACATCTTCCAGG
TG
AAGGCGGAAGTGTTAGACATGGCAGAGAACGCGTTTGACGACGAATACCTGAAGTGCAAAAGCAGAAT
G
GAATCGAAGTATATTCCGCAGATGAAGAGGGAGGAGTGGGCAAACGATGCGCTCCTGCGGATGGTGTGG
GAC
AATGCGGAGATCCAGTGGGAAGCGCGGAAGGCTCAGCTCTTCCTCCCTAGAAACTTCAAGGACACCT
AT
GGCATAGCTCTGACGGCCTACGTGAATGAGGCTCAAGAGCAGACTTCCTTCTACCACACATTCAGCAG
C
GCTGTGAAGATGGCCGGCCTGTCCCGAAGACGGTACATCTATAACTTCCCGTTCAAGGCTTTTCATTTT
TAC
TTGGTGAGAGCCCTGCAGCTGCTGAGACGACCTTGCGAGAAAAGTTACAAAACTGTGGTGTACAGCA
CA
AGCCCAGACATTTCATTCACATTCGGAGAGCAAAACCAAGCCAGGCTGGGTAACTTCACGTTGGCGTA
T
TCAGCCAAACCGGAGACAGCCGACAACCAACGGGTGCTAACCATCCAGACCTGCTTTGGAGTCGCCGTG
GGA
AAGTTTCTTAATAAAGAAGACGACAGCGTTGTTTTAATACCTCTGAGTGAGGTTTTTCAAGTGTCGA
GG
AAAGGAACTAGCAACGACCTTGTCCTTCAGAGCATAAACAGTACCTGCAGCTACTACGAGTGCGCATT
C
CTCGGGGGTCTGAAAACAGAAAATTGTATCGCGAACGCAGAATATATTGACCCTAGGTATCTCTACAAC
CCA
GATATGGACAATCAGAAGCTTGAAGACTCTGGTAGGAACAACCTTGACCCTGACAGAATGCCAGAAA
TT
AAAGTGCTACAAACAGAGGAAAATCCTCTCCTGCCGGATGAAAAGCCTGCTCCAGGTCTGGTTCCAGG
T
CCGAAATCCCATCCCTCTGCATCCTCTGGCAATACGCTCCTTCCATCAGTCATGGCATCCACCATTTTA
CTC
GTTGCTTCTGCTGTAAACTTCATCGAGCTATAG


Translation (361 aa):
MKMGHFEMVTTLLAAAVLMDIFQVKAEVLDMAENAFDDEYLKCKSRMESKYIPQMKREEWANDALLRMVW
D
NAEIQWEARKAQLFLPRNFKDTYGIALTAYVNEAQEQTSFYHTFSSAVKMAGLSRRRYIYNFPFKAFHF
Y
LVRALQLLRRPCEKSYKTVVYSTSPDISFTFGEQNQARLGNFTLAYSAKPETADNQRVLTIQTCFGVAV
G
KFLNKEDDSVVLIPLSEVFQVSRKGTSNDLVLQSINSTCSYYECAFLG
GLKTENCIANAEYIDPRYLYN
P
DMDNQKLEDSGRNNLDPDRMPEIKVLQTEENPLLPDEKPAPGLVPGPKSHPSASSGNTLLPSVMASTIL
L
VASAVNFIEL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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