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Report for CCDS38859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38859.1 Public Mus musculus 4 P3h1 23 108 98 CCDS HistoryNCBI Gene:56401Re-query CCDS DB by CCDS ID:38859.1Re-query CCDS DB by GeneID:56401See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121111.8 ENSMUSP00000112504.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121111.8Link to Ensembl Protein Viewer:ENSMUSP00000112504.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000121111Re-query CCDS DB by Protein ID:ENSMUSP00000112504
Original member Current member NCBI NM_019783.2 NP_062757.2 Accepted alive Link to Nucleotide Sequence:NM_019783.2Link to Protein Sequence:NP_062757.2Re-query CCDS DB by Nucleotide ID:NM_019783Re-query CCDS DB by Protein ID:NP_062757Link to BLAST:NP_062757.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062757.2 739 Q3V1T4-1 739 100% 0 0

Chromosomal Locations for CCDS 38859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119232957 119233430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119235246 119235398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119236777 119236966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119237865 119237996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119238646 119238785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119241117 119241206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119241482 119241534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119241683 119241804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119244022 119244149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119244385 119244480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119244957 119245107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119246635 119246752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119247131 119247206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119247445 119247585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119247891 119248046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGGCGGTGAGCGAAAGGAGGCTGCTGGCAGCGATGCTAGCGGTCGCCGCCGCCGCCGCCTTACGGGTTG
CG
GCGGAGTCTGAGCCGGGATGGGACGTGGCAGCCCCTGACCTGCTTTACGCAGAGGGGACCGCGGCCTA
C
TCGCGCGGGGACTGGCCCGGGGTGGTCCTGAACATGGAGCGGGCGCTGCGCTCGCGGGCGGCCCTGCGT
GCC
CTCCGCCTGCGCTGCCGCACACGCTGTGCCACCGAACTGCCGTGGGCACCGGACCTGGATCTCGGTC
CG
GACCCCAGCCTGAGCCAGGACCCGGGCGCCGCCGCCCTGCACGACCTGCGCTTCTTCGGAGCCGTGCT
G
CGCCGTGCCGCCTGCCTACGCCGCTGCCTCGGGCCGCCCTCTGCCCACTTGCTGAGTGAAGAACTGGAC
CTG
GAGTTCAACAAGCGGAGCCCGTACAACTACCTGCAGGTCGCCTATTTCAAGATAAACAAGCTGGAGA
AA
GCTGTGGCTGCGGCACACACCTTCTTTGTGGGCAATCCTGAGCACATGGAGATGCGGCAGAACCTCGA
C
TATTACCAAACCATGTCTGGGGTGAAGGAGGCAGACTTCAGGGATCTCGAGGCCAAGCCCCATATGCAT
GAG
TTTCGGCTGGGGGTACGACTCTACTCAGAGGAGAAGCCACAGGAAGCTGTGCCCCACCTGGAGGCGG
CA
CTGCAAGAGTACTTTGTGGCCGATGAGGAATGCCGTGCCCTCTGCGAAGGGCCCTATGACTACGACGG
C
TACAACTACCTAGACTACAGCGCTGACCTCTTCCAGGCCATCACAGATCATTACGTCCAGGTCCTCAAC
TGT
AAGCAGAACTGTGTCACGGAGCTGGCTTCCCACCCAAGTAGGGAAAAGCCCTTTGAAGACTTCCTCC
CT
TCACACTATAATTACCTACAGTTTGCCTACTACAACATTGGGAACTATACACAAGCTATTGAATGTGC
C
AAGACCTACCTCCTCTTCTTTCCCAATGATGAGGTGATGCACCAGAATCTGGCTTATTACACAGCCATG
CTT
GGAGAAGAAGAGGCCAGCTCCATCAGCCCCAGGGAGAATGCCGAGGAATACCGACGTCGAAGCCTGT
TG
GAGAAAGAACTGCTTTTCTTCGCTTATGACATTTTTGGAATTCCCTTTGTGGATCCGGACTCATGGAC
T
CCAGAAGAGGTGATTCCCAAGAGACTGCAGGAGAAACAGAAGTCGGAACGCGAAACCGCAGTCCGCATC
TCC
CAGGAGATTGGCAACCTTATGAAGGAGATCGAGACCCTCGTGGAGGAGAAGACCAAGGAGTCCTTGG
AT
GTGAGCCGACTGACGCGGGAAGGTGGTCCCCTGCTGTATGAAGGCATCAGTCTCACCATGAATTCCAA
A
GTCTTGAATGGCTCCCAGCGGGTGGTGATGGATGGTGTGATCTCTGATGATGAGTGCCAGGAGCTGCAG
AGA
CTGACCAATGCGGCAGCAACTTCGGGAGATGGCTACCGAGGTCAGACCTCCCCACACACCCCAAATG
AA
AAGTTCTATGGTGTTACTGTCCTCAAAGCTCTCAAGCTCGGGCAGGAAGGAAAAGTTCCTCTGCAGAG
T
GCCCGCATGTACTACAACGTGACAGAGAAGGTGCGGCGCGTCATGGAGTCCTACTTCCGCCTGGACACG
CCC
CTCTATTTCTCTTATTCCCACCTCGTGTGCCGCACTGCAATAGAAGAGTCACAGGCTGAGAGGAAGG
AC
AGTAGCCACCCCGTCCACGTGGATAACTGCATCCTGAATGCCGAAGCCCTCATGTGTATCAAGGAGCC
C
CCAGCCTACACGTTCCGGGACTACAGCGCCATCCTTTACCTCAATGGCGACTTCGATGGAGGAAACTTT
TAC
TTCACAGAACTAGATGCCAAGACTGTGACGGCAGAGGTGCAGCCCCAGTGTGGAAGGGCTGTGGGAT
TC
TCTTCTGGCACTGAGAACCCACATGGAGTGAAGGCTGTCACCAGGGGGCAGCGCTGCGCCATCGCCCT
G
TGGTTCACGCTGGATCCTCGGCACAGTGAGAGAGACAGGGTGCAGGCAGATGACCTGGTGAAGATGCTG
TTC
AGCCCAGAAGAGGTGGACCTCCCCCAGGAACAGCCCCTGCCTGACCAGCAGGGCTCGCCAGAGCCTG
GA
GAAGAGTCTCTGTCAGACAGAGGGTCGCTGCACAAGGATGAGCTATGA


Translation (739 aa):
MAVSERRLLAAMLAVAAAAALRVAAESEPGWDVAAPDLLYAEGTAAYSRGDWPGVVLNMERALRSRAALR
A
LRLRCRTRCATELPWAPDLDLGPDPSLSQDPGAAALHDLRFFGAVLRRAACLRRCLGPPSAHLLSEELD
L
EFNKRSPYNYLQVAYFK
INKLEKAVAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEADFRDLEAKPHMH
E
FRLGVRLYSEEKPQEAVPHLEAALQEYFVADEECRALCEGPYDYDGYNYLDYSADLFQAIT
DHYVQVLN
C
KQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYN
IGNYTQAIECAKTYLLFFPNDEVMHQNLAYYTAM
L
GEEEASSISPRE
NAEEYRRRSLLEKELLFFAYDIFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAVRI
S
QEIGNLMKEIETLVEEKTKESLDVSRLTRE
GGPLLYEGISLTMNSKVLNGSQRVVMDGVISDDECQELQ
R
LTN
AAATSGDGYRGQTSPHTPNEKFYGVTVLKALKLGQEGKVPLQSARMYYNVTEKVRRVMESYFRLDT
P
LYFSYSHLVCRTAIE
ESQAERKDSSHPVHVDNCILNAEALMCIKEPPAYTFRDYSAILYLNGDFDGGNF
Y
FTELDAKTVT
AEVQPQCGRAVGFSSGTENPHGVKAVTRGQRCAIALWFTLDPRHSERDRVQADDLVKML
F
SPEEVDLPQEQPLPDQQGSPEPGEESLSDRGSLHKDEL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser