NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17891.1 Public Mus musculus 3 Odf2l 23 108 98 CCDS HistoryNCBI Gene:52184Re-query CCDS DB by CCDS ID:17891.1Re-query CCDS DB by GeneID:52184See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098539.6 ENSMUSP00000096141.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098539.6Link to Ensembl Protein Viewer:ENSMUSP00000096141.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098539Re-query CCDS DB by Protein ID:ENSMUSP00000096141
Original member Current member EBI ENSMUST00000106192.8 ENSMUSP00000101798.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106192.8Link to Ensembl Protein Viewer:ENSMUSP00000101798.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106192Re-query CCDS DB by Protein ID:ENSMUSP00000101798
Original member NCBI NM_025714.4 NP_079990.2 Updated not alive Link to Nucleotide Sequence:NM_025714.4Link to Protein Sequence:NP_079990.2Re-query CCDS DB by Nucleotide ID:NM_025714Re-query CCDS DB by Protein ID:NP_079990
Current member NCBI NM_025714.5 NP_079990.2 Accepted alive Link to Nucleotide Sequence:NM_025714.5Link to Protein Sequence:NP_079990.2Re-query CCDS DB by Nucleotide ID:NM_025714Re-query CCDS DB by Protein ID:NP_079990Link to BLAST:NP_079990.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079990.2 589 Q9D478-2 589 100% 0 0

Chromosomal Locations for CCDS 17891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 145124269 145124375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145126093 145126225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145127023 145127151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145127831 145127890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145128010 145128081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145128890 145129006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145132632 145132817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145135625 145135734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145136588 145136723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145139784 145139894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145144312 145144416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145148531 145148616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145148915 145149077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145150960 145151085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145153384 145153512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGGAGATGCCTACTAGTGATGGAAGTCTTTCAGAGGGCCTGATTTCTTATCTCATCCGGGAGAGAGGAT
CT
GCTCCACAGTGTGCCCCTGAGAAGCACCTCAGCAGGCTCAAGCAAGACGTCGCAAATACAAAGATGGA
G
TTGAAAGCAACGCTTAAGGAAGCTCAGTTGGCATCCTGTTCAGTTGAATTACTTTTGCCATTATTTAAG
AAC
ACTGTGGAAGGAATTAGTCTAGAAAACGCTAATCTTTCTGCATCCAGTTTGAAGAAGATTTTTGAAC
AG
AACGACATATTATCAAAAGAATTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAA
A
CAGACTGACTATGAACAAATAGGAGACAGCTTGCTATGCTTGTTGAAGGATCTCAGTGACAATGAAAGT
GAG
AACAGAAACCTTGAGGAAAAAGTACTTGAAAAGGAGACCTATATCCGTGAACTCTCGTGTCTGTTTC
AG
AATGAAAAGGAAAGTGCTTTGAAAGCAAACAGGCTTTCTCAATCAGTCAAAGTAGTGCACGATCGTCT
A
CAGCGCCAAATTCAGAAGAGGGAAGCTGAGAATGAAAAGCTAAAAGAACATGTACAGAGCTTGGAAACC
CAA
ATAGCCAAGTGGAACTTGCAGGTGAAAATGAATAAGCAAGAGGCTGTAGCCATCAAGGAAGCAAGTC
GG
CAAAAGGCTGTAGCTCTGAAAAAAGCATCGAAAGTGTACAGACAAAGGCTGCGACACTTCACAGGGGA
T
ATCGAGCGCCTCGCCTCCCAAGTCAGAGATCAGGAAGCCAAGCTGTCTGAAACAGTTTCAGCTTCCAGT
GAC
TGGAAAAGTCAGTTCGAGAAAATTGCCATAGAAAAAACTGAGCTGGAAGTGCAGATCGAAACAATGA
AA
AAGCAAATCGCTAACCTTTTGGAAGACTTGAGAAAAATGGAAACTCATGGGAAAAACTCATGTGAAGA
A
ATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCCTAAATATTGAGAATGTGAAATTAAAG
GGT
ACACTTGATGCCTTGAAGGATGAAGTTGCTTCTGTTGAAAATGAACTTGTAGAACTGCAAGAAGTAG
AA
AAACGACAAAAAACCCTCGTCGAAGGATACAGGACTCAGGTACAAAAGTTGCAAGAAGCAGCTGAAAT
G
GTGAAAAGTAGATGCAAAAATTTACTACATGAAAATAACCTAATAATAACGAATAAAAACAAAAAGTTA
GAG
AAGGTTGATGGAAACCAAAGCCTTCTGACCAAGCTTTCTCTTGAGGAAGAAAATCATCTCATTCAGT
TA
AAGTGTGAGAACCTTAAAGAGAAACTAGAGCAGATGGATGCAGAGAATAAAGAGCTTGAGAAGAAGCT
G
GCCGACCAAGAGGAGTGTCTCAAGCACAGTGACCTGGAGCTGAAAGAGAAGGCTGCAGAGTACACAGCC
CTG
TCCAGGCAACTGGAAGCCGCTTTGGAAGAAGGAAGACAAAAGGTTTCAGAAGAAGTAGAGAAAATGT
CA
TCTAGAGAGAGGGCTTTACAAATTAAAATATTAGATCTGGAAGCTGAGCTTAGAAAGAAAAATGAAGA
A
CAAAACCAACTTGTTGACAAGATGAACACTAAAACCCAGCACCAGGCTATCTGCTTGAAGGAAATACAG
CAC
AGCCTTGAGAAGTCGGAGACTCGGAATGAGAGCATTAAGAATTACTTGCAGTTTCTTCAAATTTCCT
AT
GTAACGATGTTTAGATAA


Translation (589 aa):
MEMPTSDGSLSEGLISYLIRERGSAPQCAPEKHLSRLKQDVANTKMELKATLKEAQLASCSVELLLPLFK
N
TVEGISLEN
ANLSASSLKKIFEQNDILSKELDTFNRVKLALEHLIKQTDYEQIGDSLLCLLKDLSDNES
E
NR
NLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQSLET
Q
IAKWNLQVKMNKQEAVAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQ
EAKLSETVSASS
D
WKSQFEKIAIEKTELEVQIETMK
KQIANLLEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLK
G
TLDALKDEVASVENELVELQEVEKRQKTLVEGYRTQ
VQKLQEAAEMVKSRCKNLLHENNLIITNKNKKL
E
K
VDGNQSLLTKLSLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTA
L
SRQLEAALEEGRQK
VSEEVEKMSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQ
H
SLEKSETRNESIKNYLQFLQISYVTMFR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser