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Report for CCDS51087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51087.1 Public Mus musculus 3 Odf2l 23 108 98 CCDS HistoryNCBI Gene:52184Re-query CCDS DB by CCDS ID:51087.1Re-query CCDS DB by GeneID:52184See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098538.8 ENSMUSP00000096140.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098538.8Link to Ensembl Protein Viewer:ENSMUSP00000096140.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098538Re-query CCDS DB by Protein ID:ENSMUSP00000096140
Original member NCBI NM_001162538.1 NP_001156010.1 Updated not alive Link to Nucleotide Sequence:NM_001162538.1Link to Protein Sequence:NP_001156010.1Re-query CCDS DB by Nucleotide ID:NM_001162538Re-query CCDS DB by Protein ID:NP_001156010
Current member NCBI NM_001162538.2 NP_001156010.1 Accepted alive Link to Nucleotide Sequence:NM_001162538.2Link to Protein Sequence:NP_001156010.1Re-query CCDS DB by Nucleotide ID:NM_001162538Re-query CCDS DB by Protein ID:NP_001156010Link to BLAST:NP_001156010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156010.1 642 Q9D478-1 642 100% 0 0

Chromosomal Locations for CCDS 51087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 145124269 145124375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145126093 145126225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145127023 145127151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145127831 145127890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145128010 145128081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145128890 145129006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145132632 145132817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145135625 145135734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145136588 145136723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145139784 145139894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145144312 145144416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145146763 145146921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145148531 145148616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145148915 145149077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145150960 145151085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145153384 145153512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGGAGATGCCTACTAGTGATGGAAGTCTTTCAGAGGGCCTGATTTCTTATCTCATCCGGGAGAGAGGAT
CTGCTCCACAGTGTGCCCCTGAGAAGCACCTCAGCAGGCTCAAGCAAGACGTCGCAAATACAAAGATGGA
GTTGAAAGCAACGCTTAAGGAAGCTCAGTTGGCATCCTGTTCAGTTGAATTACTTTTGCCATTATTTAAG
AACACTGTGGAAGGAATTAGTCTAGAAAACGCTAATCTTTCTGCATCCAGTTTGAAGAAGATTTTTGAAC
AGAACGACATATTATCAAAAGAATTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAA
ACAGACTGACTATGAACAAATAGGAGACAGCTTGCTATGCTTGTTGAAGGATCTCAGTGACAATGAAAGT
GAGAACAGAAACCTTGAGGAAAAAGTACTTGAAAAGGAGACCTATATCCGTGAACTCTCGTGTCTGTTTC
AGAATGAAAAGGAAAGTGCTTTGAAAGCAAACAGGCTTTCTCAATCAGTCAAAGTAGTGCACGATCGTCT
ACAGCGCCAAATTCAGAAGAGGGAAGCTGAGAATGAAAAGCTAAAAGAACATGTACAGAGCTTGGAAACC
CAAATAGCCAAGTGGAACTTGCAGGTGAAAATGAATAAGCAAGAGGCTGTAGCCATCAAGGAAGCAAGTC
GGCAAAAGGCTGTAGCTCTGAAAAAAGCATCGAAAGTGTACAGACAAAGGCTGCGACACTTCACAGGGGA
TATCGAGCGCCTCGCCTCCCAAGTCAGAGATCAGGAAGCCAAGCTGTCTGAAACAGTTTCAGCTTCCAGT
GACTGGAAAAGTCAGTTCGAGAAAATTGCCATAGAAAAAACTGAGCTGGAAGTGCAGATCGAAACAATGA
AAAAGCAAATCGCTAACCTTTTGGAAGACTTGAGAAAAATGGAAACTCATGGGAAAAACTCATGTGAAGA
AATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCCTAAATATTGAGAATGTGAAATTAAAG
GGTACACTTGATGCCTTGAAGGATGAAGTTGCTTCTGTTGAAAATGAACTTGTAGAACTGCAAGAAGTAG
AAAAACGACAAAAAACCCTCGTCGAAGGATACAGGACTCAGGTACAAAAGTTGCAAGAAGCAGCTGAAAT
GGTGAAAAGTAGATGCAAAAATTTACTACATGAAAATAACCTAATAATAACGAATAAAAACAAAAAGTTA
GAGAAGATGAGAGGCCAGGTGGAGTCGAATCTGAAGCAGGTAGAGCAAGCCCGCAGCTCCTTCACGTCAG
CCGAACAGAGACTTCAGGAGTGTCAGGAGAAGCTGCAGCGCTGCAAGGAGAAGTGTGCAGAGCAGGCGCT
CACCATTAGGGAGCTTCAAGGCCAGGTTGATGGAAACCAAAGCCTTCTGACCAAGCTTTCTCTTGAGGAA
GAAAATCATCTCATTCAGTTAAAGTGTGAGAACCTTAAAGAGAAACTAGAGCAGATGGATGCAGAGAATA
AAGAGCTTGAGAAGAAGCTGGCCGACCAAGAGGAGTGTCTCAAGCACAGTGACCTGGAGCTGAAAGAGAA
GGCTGCAGAGTACACAGCCCTGTCCAGGCAACTGGAAGCCGCTTTGGAAGAAGGAAGACAAAAGGTTTCA
GAAGAAGTAGAGAAAATGTCATCTAGAGAGAGGGCTTTACAAATTAAAATATTAGATCTGGAAGCTGAGC
TTAGAAAGAAAAATGAAGAACAAAACCAACTTGTTGACAAGATGAACACTAAAACCCAGCACCAGGCTAT
CTGCTTGAAGGAAATACAGCACAGCCTTGAGAAGTCGGAGACTCGGAATGAGAGCATTAAGAATTACTTG
CAGTTTCTTCAAATTTCCTATGTAACGATGTTTAGATAA

Translation (642 aa):
MEMPTSDGSLSEGLISYLIRERGSAPQCAPEKHLSRLKQDVANTKMELKATLKEAQLASCSVELLLPLFK
NTVEGISLENANLSASSLKKIFEQNDILSKELDTFNRVKLALEHLIKQTDYEQIGDSLLCLLKDLSDNES
ENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQSLET
QIAKWNLQVKMNKQEAVAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASS
DWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLK
GTLDALKDEVASVENELVELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKL
EKMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEE
ENHLIQLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVS
EEVEKMSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYL
QFLQISYVTMFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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