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Report for CCDS50715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50715.1 Public Mus musculus 2 Gfra4 23 108 98 CCDS HistoryNCBI Gene:14588Re-query CCDS DB by CCDS ID:50715.1Re-query CCDS DB by GeneID:14588See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110240.9 ENSMUSP00000105869.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110240.9Link to Ensembl Protein Viewer:ENSMUSP00000105869.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110240Re-query CCDS DB by Protein ID:ENSMUSP00000105869
Original member Current member NCBI NM_001136063.2 NP_001129535.1 Accepted alive Link to Nucleotide Sequence:NM_001136063.2Link to Protein Sequence:NP_001129535.1Re-query CCDS DB by Nucleotide ID:NM_001136063Re-query CCDS DB by Protein ID:NP_001129535Link to BLAST:NP_001129535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129535.1 293 Q9JJT2-2 293 100% 0 0

Chromosomal Locations for CCDS 50715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131040176 131040325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131040399 131040475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131041016 131041150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131041232 131041341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131041395 131041758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131043043 131043088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCCCACTGCATGGAGTCTGCACTGCTGCTGTTGTTGCTGCTGGGGTCTGCGAGCTTTACCGACGGGA
ATCGCTGCGTGGACGCGGCCGAGGCGTGTACAGCAGACGAGCGGTGCCAGCAGCTGCGCTCTGAGTACGT
GGCACGATGCCTGGGCCGGGCAGCGCCCGGGGGCAGGCCGGGACCCGGGGGCTGCGTGCGCTCCCGCTGC
CGCCGAGCCCTGCGCCGCTTCTTCGCGCGTGGGCCTCCGGCGCTCACGCATGCGCTGCTCTTCTGCGGCT
GCGAAGGCTCCGCGTGCGCCGAGCGCCGGCGCCAGACTTTCGCGCCCGCCTGCGCGTTCTCCGGCCCGGG
GTTGGTGCCGCCCTCTTGCCTGGAGCCCCTGGAGCGCTGCGAGCGCAGCCGCCTGTGCCGGCCCCGTCTC
CTTGCCTTCCAGGCCTCATGCGCTCCCGCGCCCGGCTCCCGCGACCGCTGCCCGGAGGAGGGGGGCCCGC
GTTGTCTGCGCGTCTACGCAGGCCTCATAGGCACCGTGGTCACCCCCAACTACCTGGACAACGTGAGCGC
GCGCGTTGCGCCCTGGTGCGGCTGTGCGGCCAGTGGAAACCGGCGCGAAGAATGCGAAGCCTTCCGCAAG
CTCTTTACAAGGAACCCCTGCTTGGATGGTGCCATACAAGCCTTTGACAGCTTGCAGCCATCAGTTCTGC
AGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAA
ACAGTCCTTGTTTTGTCCTAACGCCCAAGGTGTCCTGGCTGTATGCACTCACTGCCCTGGCTCTCCAGGC
CCTGCTCTGATTAGGAACATGAACCGTGGACGACACAGCTGA

Translation (293 aa):
MAHCMESALLLLLLLGSASFTDGNRCVDAAEACTADERCQQLRSEYVARCLGRAAPGGRPGPGGCVRSRC
RRALRRFFARGPPALTHALLFCGCEGSACAERRRQTFAPACAFSGPGLVPPSCLEPLERCERSRLCRPRL
LAFQASCAPAPGSRDRCPEEGGPRCLRVYAGLIGTVVTPNYLDNVSARVAPWCGCAASGNRREECEAFRK
LFTRNPCLDGAIQAFDSLQPSVLQDQTAGCCFPRARHEWPEKSWRQKQSLFCPNAQGVLAVCTHCPGSPG
PALIRNMNRGRHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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