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Report for CCDS70975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70975.1 Public Mus musculus 2 Camk1d 23 108 98 CCDS HistoryNCBI Gene:227541Re-query CCDS DB by CCDS ID:70975.1Re-query CCDS DB by GeneID:227541See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114987.3 ENSMUSP00000110638.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114987.3Link to Ensembl Protein Viewer:ENSMUSP00000110638.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114987Re-query CCDS DB by Protein ID:ENSMUSP00000110638
Original member Current member NCBI NM_001290376.1 NP_001277305.1 Accepted alive Link to Nucleotide Sequence:NM_001290376.1Link to Protein Sequence:NP_001277305.1Re-query CCDS DB by Nucleotide ID:NM_001290376Re-query CCDS DB by Protein ID:NP_001277305Link to BLAST:NP_001277305.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277305.1 377 Q8BW96-3 377 100% 0 0

Chromosomal Locations for CCDS 70975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 5298983 5299101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5301496 5301613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5303291 5303378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5310992 5311070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5313089 5313201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5339182 5339257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5354669 5354795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5361989 5362127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5445070 5445144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5565649 5565780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5675914 5675981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGGCGGAGTTTGTGTCTTGGTCCTGCTTAAATTTCAGATGGAGCTGGATAAAGGGTTCCAGAAACAGTG
GGGCCTTTTCTGAAGTTGTTTTAGCCGAGGAGAAAGCTACTGGGAAGCTCTTCGCAGTGAAGTGCATCCC
GAAGAAGGCGCTGAAGGGCAAGGAGAGCAGCATCGAGAACGAGATTGCCGTGCTTAGAAAGATTAAGCAT
GAAAACATTGTTGCCTTGGAAGATATTTATGAAAGCCCAAATCACCTCTACCTGGTCATGCAACTTGTGT
CTGGTGGAGAACTCTTCGATCGGATAGTGGAGAAGGGGTTTTACACAGAGAAAGATGCCAGCACTCTCAT
CCGCCAGGTCCTGGATGCCGTATACTATCTCCACAGAATGGGCATTGTCCACAGGGACCTCAAGCCGGAG
AATCTCTTATACTACAGTCAAGACGAGGAGTCCAAAATAATGATCAGTGACTTTGGCTTGTCGAAAATGG
AGGGCAAAGGAGATGTGATGTCCACGGCCTGCGGGACCCCAGGCTATGTTGCTCCGGAAGTTCTCGCCCA
GAAACCGTACAGCAAAGCTGTGGACTGCTGGTCCATCGGGGTGATCGCCTATATCTTGCTCTGTGGTTAC
CCTCCTTTTTATGATGAAAATGACTCGAAGCTGTTTGAACAGATCCTCAAGGCAGAATATGAGTTTGATT
CCCCCTACTGGGATGACATCTCCGACTCTGCCAAAGACTTCATTCGGAATCTGATGGAGAAAGACCCAAA
TAAAAGATACACTTGTGAGCAGGCAGCTCGACACCCATGGATTGCTGGTGACACAGCCCTTAGCAAAAAC
ATTCACGAATCTGTCAGTGCCCAGATCCGGAAGAATTTTGCAAAGAGCAAATGGAGACAAGCGTTTAACG
CCACGGCAGTCGTGAGACATATGCGGAGGCTCCAGCTTGGCAGCAGCCTGGACAGTTCAAATGCAAGTGT
CTCAAGCAACCTCAGTTTGGCCAGCCAAAAAGATTGTCTGGCACCTTCCACGCTCTGTAGTTTCCTTTCT
TCTTCGTCGGGGGTCGCAGGAGTCGGAGCTGAGAGGAGACCCAGGCCCACCACTGTGACAACAGGGCACA
CTGGAAGCAAGTGA

Translation (377 aa):
MAEFVSWSCLNFRWSWIKGSRNSGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH
ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPE
NLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY
PPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKN
IHESVSAQIRKNFAKSKWRQAFNATAVVRHMRRLQLGSSLDSSNASVSSNLSLASQKDCLAPSTLCSFLS
SSSGVAGVGAERRPRPTTVTTGHTGSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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