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Report for CCDS79194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79194.1 Public Mus musculus 13 Spock1 23 108 98 CCDS HistoryNCBI Gene:20745Re-query CCDS DB by CCDS ID:79194.1Re-query CCDS DB by GeneID:20745See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189373.7 ENSMUSP00000139863.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189373.7Link to Ensembl Protein Viewer:ENSMUSP00000139863.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189373Re-query CCDS DB by Protein ID:ENSMUSP00000139863
Original member Current member NCBI NM_001166464.1 NP_001159936.1 Accepted alive Link to Nucleotide Sequence:NM_001166464.1Link to Protein Sequence:NP_001159936.1Re-query CCDS DB by Nucleotide ID:NM_001166464Re-query CCDS DB by Protein ID:NP_001159936Link to BLAST:NP_001159936.1

Chromosomal Locations for CCDS 79194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 57423090 57423193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57436110 57436172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57440321 57440542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57444307 57444423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57512692 57512806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57556680 57556806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57587619 57587733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57696110 57696155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57702304 57702312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57907402 57907587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGCCAGCGATCGCGGTGCTCGCGGCGGCCGCCGCGGCGTGGTGCTTCCTCCAAGTGGACAGCCGGCACC
TG
GACGCGCTGGCCGGTGGCGCGGCCCTCAACAACGCCAATTTCCTAGACAATGACCAGTGGCTGAGCAC
T
GTCTCCCAGTATGACCGTGACAAGTACTGGAACCGCTTCCGAGATGAAGTTGAGGATGACTATTTCAGA
AAC
TGGAATCCCAACAAGCCCTTCGACCAAGCCCTGGACCCATCCAAGGACCCCTGCCTGAAGGTGAAAT
GC
AGCCCGCACAAAGTATGTGTGACCCAGGACTACCAGACGGCTCTGTGTGTCAGCCGCAAGCACCTGTT
G
CCCAGGCAGAAGAAGGGCAATGTGGCTCACAAACACTGGCTTGGACCTTCCAATCTGGTTAAGTGCAAG
CCT
TGCCCCGTGGCGCAGTCAGCGATGGTCTGCGGCTCTGACGGCCACACGTACACGTCCAAGTGCAAGT
TG
GAATTCCACGCTTGTTCTACAGGCAAAAGCCTCAACTCCCTCTGTGATGGGCCCTGTCCGTGTCTGCC
T
GAGCCTGAGCCACTGAAGCCCAAAGCAGAGAAGAGTGCCTGCACGGACAAGGAGCTGCGGAACCTCGCC
TCC
CGGCTGAAGGACTGGTTCGGGGCTCTTCATGAGGACGCCAATAGAGTCATCAAGCCTACCAGCTCTG
AT
CCAGCCCAAGGCAGGTTTGACACCAGCATCTTACCCATTTGCAAGGACTCCTTGGGTTGGATGTTCAA
C
AAGTTGGACATGAACTATGACCTGTTGCTGGACCACTCAGAGATCAATGCCATCTACCTAGACAAATAT
GAG
CCCTGCATCAAGCCTCTCTTCAACTCGTGCGACTCCTTCAAGGACGGCAAACTCTCCAACAATGAGT
GG
TGTTACTGCTTCCAGAAGCCAGCGGGTCTCCCTTGCCAGAATGAAATGAACAGAATTCAGAAGCTAAG
C
AAGGGGAAAAGCCTACTGGGAACAACTTTGGAAAATGGGACCGTGCCCACACGGCTGAGTGTGCATCAA
TTT
CTTCTCTCTCTGTGGAGGAGTTCGTGGGTTCTTCCCATCCATCGTCAGTAA


Translation (367 aa):
MPAIAVLAAAAAAWCFLQVDSRHLDALAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRFRDEVEDDYFR
N
WNPNKPFDQ
ALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCK
P
CPVAQSAMVCGSDGHTYTSK
CKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLA
S
RLKDWFGALHEDANRVIKPTSSDPAQG
RFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKY
E
PCIKPLFNSCDSFKDGKLSNNEWCYCFQKPA
GLPCQNEMNRIQKLSKGKSLLGTTLENGTVPTRLSVHQ
F
LLSLWRSSWVLPIHRQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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