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Report for CCDS49220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49220.1 Public Mus musculus 13 Slc17a3 23 108 98 CCDS HistoryNCBI Gene:105355Re-query CCDS DB by CCDS ID:49220.1Re-query CCDS DB by GeneID:105355See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110422.2 ENSMUSP00000106052.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110422.2Link to Ensembl Protein Viewer:ENSMUSP00000106052.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110422Re-query CCDS DB by Protein ID:ENSMUSP00000106052
Original member Current member NCBI NM_001164743.1 NP_001158215.1 Accepted alive Link to Nucleotide Sequence:NM_001164743.1Link to Protein Sequence:NP_001158215.1Re-query CCDS DB by Nucleotide ID:NM_001164743Re-query CCDS DB by Protein ID:NP_001158215Link to BLAST:NP_001158215.1

Chromosomal Locations for CCDS 49220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23845354 23845548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23846211 23846444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23846878 23846965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23852348 23852434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23855573 23855691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23855812 23855973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23856454 23856583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23856682 23856829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23857101 23857191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23857979 23858113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGCGCTATGGAATCGCCTTCGTCACACATTTCTGCAATTTCACACTGATGGCGCAGAATTCTATTATAA
GCATCACCATGGTAGCAATGGTCAACAACACCGACCACCCACCCCACCTCAATAGCTCTACTGAACAGCT
TCCTGCGGGTTTAAGCGGTGATCAGCATGAAGCCTCAAAGCATCTTCCTATAAAGGCCCCTGTGTATAAC
TGGAGTCCTCAAACTCAAGGAATCATCTTCAGCTCTGTCCAGTATGGCATGATACTGATGCAAGGTCCTG
GAGGATACTTGGCAGGGAAAATAGGAACAAAGAAAGTGGTTGGAATTGCTCTGCTTGGATCTTCATTACT
CACTCTCTGCATCCCACTGGCTGCCAATCTTGGACTAGTTTTTTTCCTGGCAACTCGAGCAGTTCAAGGC
TTAATGCAGGGCACTGGATATGGGGGACAGTTTGCACTCTGGCAGAAATGGGCTCCTCCGAATGAGCGCA
GCCGACTCTGCACCATTGCCTTGTCAGGAATGACATTGGGAATCTTTACTGTCCTCCTTGTGGGCGGCAT
CATTAGTGAAGCCCTTGGGTGGCCCTTTGTCTTCTATAGTTTTGGAGGTGGTGGTGTGCTCTGCAGCCTT
CTCTGGTTCATTCTGATTTATGATGACCCTGTCTCTCACCCATGGATAAGTGGCCCAGAAAGAGAATATA
TTTTATCCTCTCTGAACCAACAGTTCAGCTCAGAAGAGCAGCCACTTCCCATCAAAGCTATGCTCAAATC
TCTGCCTCTCTGGTCCATGTGTCTCTGCACTATGACCCATCAGTGGCTTGTTAACACCTTTATAATGTAC
ACTCCAACCTACATCAGTTCTGTATTCAAAGTTAACATCAGAGACAATGGGTTCCTGTCTTCTCTTCCCT
TTATTGTTGCCTGGGTCCTTGGTATCCTGGGAGGCTGGCTGGCAGATTTTCTACTGAGCAAGAATTTTAG
GCTCATAACTGTGAGAAAATTCATCACACTTTTAGGAAATGCTCCTCCTGCAGCCCTCGTTGCGGCTCTG
CCCTATATCCAATCCAGCTATATTACAACAATTATATTTCTGACAATTTCCTGTGGACTGTGCCCTCTAT
CTCAGGCAGGAATCTATATTAATGCGTTAGACATTGCTCCAAGGTATGCCAGCTTTCTCATGGGAACATC
AAGAGGATTGGCACATTCATCGGCTGTGCTGGTACCCATTGTTGCTGGCTTTTTCCTCAGCCAGGACTCT
GAATTCGGGTGGAGGAATTTCTTTTTTGTAGTGTTTGCAGTTAACCTACTTGGCTTAATCATCTACCTCG
TGTTTGGGAAAGCAGATGTTCAAGAATGGGCTAGAGAGAGGAAGCTCACTCGTTTGTGA

Translation (462 aa):
MRYGIAFVTHFCNFTLMAQNSIISITMVAMVNNTDHPPHLNSSTEQLPAGLSGDQHEASKHLPIKAPVYN
WSPQTQGIIFSSVQYGMILMQGPGGYLAGKIGTKKVVGIALLGSSLLTLCIPLAANLGLVFFLATRAVQG
LMQGTGYGGQFALWQKWAPPNERSRLCTIALSGMTLGIFTVLLVGGIISEALGWPFVFYSFGGGGVLCSL
LWFILIYDDPVSHPWISGPEREYILSSLNQQFSSEEQPLPIKAMLKSLPLWSMCLCTMTHQWLVNTFIMY
TPTYISSVFKVNIRDNGFLSSLPFIVAWVLGILGGWLADFLLSKNFRLITVRKFITLLGNAPPAALVAAL
PYIQSSYITTIIFLTISCGLCPLSQAGIYINALDIAPRYASFLMGTSRGLAHSSAVLVPIVAGFFLSQDS
EFGWRNFFFVVFAVNLLGLIIYLVFGKADVQEWARERKLTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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