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Report for CCDS49150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49150.1 Public Mus musculus 12 Otub2 23 108 98 CCDS HistoryNCBI Gene:68149Re-query CCDS DB by CCDS ID:49150.1Re-query CCDS DB by GeneID:68149See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49150.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101094.8 ENSMUSP00000098655.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101094.8Link to Ensembl Protein Viewer:ENSMUSP00000098655.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101094Re-query CCDS DB by Protein ID:ENSMUSP00000098655
Original member Current member EBI ENSMUST00000179684.2 ENSMUSP00000137162.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179684.2Link to Ensembl Protein Viewer:ENSMUSP00000137162.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179684Re-query CCDS DB by Protein ID:ENSMUSP00000137162
Original member NCBI NM_001177841.1 NP_001171312.1 Updated not alive Link to Nucleotide Sequence:NM_001177841.1Link to Protein Sequence:NP_001171312.1Re-query CCDS DB by Nucleotide ID:NM_001177841Re-query CCDS DB by Protein ID:NP_001171312
Current member NCBI NM_001177841.2 NP_001171312.1 Accepted alive Link to Nucleotide Sequence:NM_001177841.2Link to Protein Sequence:NP_001171312.1Re-query CCDS DB by Nucleotide ID:NM_001177841Re-query CCDS DB by Protein ID:NP_001171312Link to BLAST:NP_001171312.1

Chromosomal Locations for CCDS 49150.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103392654 103392923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103400196 103400291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103400949 103401067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103402817 103402901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103403234 103403428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103404226 103404432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCCCTTCCCTCCAGTCTCCAGGACCTCATTCCTCGCTTCCATCTGAGGCGCCATCCTCGGGGCCTCT
TTTGTGCCAGTTCCTGCCAGCGCTCTCACACAGAATCTTCTGGGAAGACCCCCACTTTACCTTCTGTTCT
CCGTCTTGTCTTACCCACTCCAAAATCGCCCTTGGTGGCCTGTTCACAGCTGCGAAGGCTGCTCCAGCAT
CCTCCAGGGAGGTGTCCCAGCTGTAGCCACTGCCCCATCCCGAAGCCTTCATGTCTGCAGAGTGAAACAT
CTTTCAACCTAATATCAGAAAAATGTGACATTCTATCCATTCTTCGGGATCATCCTGAAAACAGGATTTA
CCAGAGGAAAATCCAGGAACTCAGCAAAAGATTCACCTCGATCCGGAAGACCAAAGGAGACGGAAACTGC
TTCTACAGGGCCTTAGGCTATTCCTACCTGGAGTCCTTGCTGGGCAAGAGCAGAGAGATCCTCAAGTTCA
AAGAGCGTGTGCTACAGACCCCAAATGACCTTCTGGCTGCCGGCTTTGAGGAACACAAGTTCAGAAACTT
CTTTAATGCTTTTTACAGTGTGGTTGAGCTGGTAGAGAAGGATAGCTCAGTGTCCAGCCTGCTGAAGGTG
TTCAATGACCAGAGTTCCTCGGACCGAATCGTGCAGTTCTTACGCCTCCTCACGTCGGCCTTCATCAGGA
ACCGAGCTGACTTCTTCCGACATTTCATTGATGAGGAGATGGACATCAAAGACTTCTGCACTCACGAAGT
AGAGCCCATGGCCATGGAGTGTGACCACGTGCAGATCACAGCCCTGTCGCAGGCACTCAACATTGCTCTG
CAGGTAGAGTACGTCGACGAGATGGACACCGCTCTGAACCACCACGTGTTCCCCGAGGCTGCCATCCCTT
CGGTTTATCTGCTCTATAAAACATCCCACTACAACATCCTTTACGCAGCCGAGAAACACTGA

Translation (323 aa):
MALPSSLQDLIPRFHLRRHPRGLFCASSCQRSHTESSGKTPTLPSVLRLVLPTPKSPLVACSQLRRLLQH
PPGRCPSCSHCPIPKPSCLQSETSFNLISEKCDILSILRDHPENRIYQRKIQELSKRFTSIRKTKGDGNC
FYRALGYSYLESLLGKSREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDSSVSSLLKV
FNDQSSSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMAMECDHVQITALSQALNIAL
QVEYVDEMDTALNHHVFPEAAIPSVYLLYKTSHYNILYAAEKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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