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Report for CCDS79136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79136.1 Public Mus musculus 12 Vsx2 23 108 98 CCDS HistoryNCBI Gene:12677Re-query CCDS DB by CCDS ID:79136.1Re-query CCDS DB by GeneID:12677See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169934.3 ENSMUSP00000131009.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169934.3Link to Ensembl Protein Viewer:ENSMUSP00000131009.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169934Re-query CCDS DB by Protein ID:ENSMUSP00000131009
Original member Current member NCBI NM_001301427.1 NP_001288356.1 Accepted alive Link to Nucleotide Sequence:NM_001301427.1Link to Protein Sequence:NP_001288356.1Re-query CCDS DB by Nucleotide ID:NM_001301427Re-query CCDS DB by Protein ID:NP_001288356Link to BLAST:NP_001288356.1

Chromosomal Locations for CCDS 79136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84569943 84570312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84571570 84571654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84576279 84576402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84592171 84592351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84593072 84593454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGACGGGGAAAGCGGGGGAAGCGCTGAGCAAGCCCAAATCCGAGACAGTGGCCAAGAGTACCTCGGGGG
GCGCCCCGGCCAGGTGCACAGGGTTCGGCATCCAGGAGATCCTAGGCTTGAACAAGGAGCCTCCCAGCTC
CCACCCGCGGGCTGCCCTCGACGGCCTGGCCCCTGGGCATTTGTTAGCTGCGCGCTCCGTTCTCAGCCCG
GCAGGAGTGGGCAGCATGGGGCTGCTGGGGCCCGGGGGACTTCCCGGCTTCTACACACAGCCCACCTTCT
TGGAAGTGCTGTCCGATCCGCAGAGCGTCCACTTGCAGCCACTAGGCAGAGCGTCGGGGCCGCTGGACAC
CAGCCAGACGGCCAGCTCCGATTCCGAAGATGTTTCCTCCAGTGACCGAAAAATGTCCAAATCGGCTTTA
AACCAGACCAAGAAGCGTAAGAAGCGGCGACACAGGACAATCTTTACTTCCTACCAGCTAGAGGAGCTGG
AGAAAGCATTCAATGAAGCCCACTACCCAGATGTCTACGCCCGGGAGATGCTGGCCATGAAAACGGAGCT
CCCAGAAGACAGGATACAGGTGTGGTTCCAGAACCGCAGAGCCAAGTGGAGGAAGAGGGAGAAGTGCTGG
GGCCGGAGCAGCGTCATGGCTGAGTATGGTCTCTATGGAGCCATGGTGAGGCACTCGATCCCCCTGCCAG
AGTCTATCCTCAAGTCTGCCAAGGATGGCATAATGGATTCCTGTGCCCCATGGCTACTGGTTCAAGATGG
CTTTCCCAGGCGCTTTTCTAAACCCGAATACCAACAATTCTTTTTAGGGATGCACAAAAAGTCGCTGGAG
GCAGCAGCTGAGTCGGGAAGGAAGCCCGAGGTGGAACGCCAGGCCCTGCCCAAGCTCGACAAGATGGAGC
AGGAGGAACGGGCCCCAGAGGCCCAGGCAGCCATCTCCCAGGAAGAACTGAGGGAGAACAGCATTGCCGC
CCTCCGAGCCAAAGCTCAGGAACACAGCACCAAGGTTCTGGGGACTGTATCTGGGCCTGACAGCCTGGCC
AGAAATGCTGAGAAGCCAGAAGAAGAGGACGCCACGGAGGAAGACAGGCCAGCTGAGAAGCTCAGCCCAC
CGCAGCTGGAGGACATGGCTTAG

Translation (380 aa):
MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGHLLAARSVLSP
AGVGSMGLLGPGGLPGFYTQPTFLEVLSDPQSVHLQPLGRASGPLDTSQTASSDSEDVSSSDRKMSKSAL
NQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCW
GRSSVMAEYGLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLVQDGFPRRFSKPEYQQFFLGMHKKSLE
AAAESGRKPEVERQALPKLDKMEQEERAPEAQAAISQEELRENSIAALRAKAQEHSTKVLGTVSGPDSLA
RNAEKPEEEDATEEDRPAEKLSPPQLEDMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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