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Report for CCDS56844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56844.1 Public Mus musculus 12 Jkamp 23 108 98 CCDS HistoryNCBI Gene:104771Re-query CCDS DB by CCDS ID:56844.1Re-query CCDS DB by GeneID:104771See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117449.7 ENSMUSP00000113744.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117449.7Link to Ensembl Protein Viewer:ENSMUSP00000113744.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117449Re-query CCDS DB by Protein ID:ENSMUSP00000113744
Original member Current member NCBI NM_001205067.1 NP_001191996.1 Accepted alive Link to Nucleotide Sequence:NM_001205067.1Link to Protein Sequence:NP_001191996.1Re-query CCDS DB by Nucleotide ID:NM_001205067Re-query CCDS DB by Protein ID:NP_001191996Link to BLAST:NP_001191996.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191996.1 305 Q8BI36-2 305 100% 0 0

Chromosomal Locations for CCDS 56844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72086180 72086183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72089333 72089406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72089956 72090110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72093937 72094143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72094686 72094867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72100047 72100123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72100610 72100828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGCATGCCTTGGACTCTACTGTGGGAAGACCCTATTATTTAAAAATGGCTCAAGTGAAATCTATGGAG
AATGTGGGGTATGCCCAAGAGGACAGAGGACCAATGCACAGAAGTACTGTCAGCCTTGCACAGAGTCCCC
AGAACTTTACGACTGGCTCTATCTGGGCTTTATGGCTATGCTTCCTCTTGTTCTGCATTGGTTCTTCATT
GAATGGTACTCGGGGAAAAAGAGCTCCAGTGCTCTTTTCCAGCACATCACCGCGCTCTTTGAATGCACCA
TGGCAGCTATCATCACCTTACTCGTGAGTGATCCCGTGGGCGTCCTTTACATCCGTTCCTGCCGCGTTCT
GATGCTTTCTGATTGGTACACGATGCTCTACAACCCAAGTCCAGATTACGTCACCACGGTGCACTGCACT
CACGAAGCCGTCTACCCACTGTACACCATCGTGTTCGTTTATTACGCGTTCTGCTTGGTGTTAATGATGC
TTCTGCGGCCTCTCCTGGTGAAGAAGATCGCATGCGGACTCGGCAAGTCTGACCGCTTCAAAAGTATTTA
CGCAGCTCTTTACTTCTTCCCCATCCTGACCGTGCTGCAGGCGGTCGGTGGGGGCCTCTTATATTACGCC
TTCCCGTACATTATATTAGTGTTATCTCTGGTTACCCTGGCTGTATACATGTCTGCTTCTGAAATAGAGA
ACTGCTATGATCTCCTGGTCAGGAAGAAAAGACTTATCGTTCTCTTCAGCCACTGGCTACTGCACGCCTA
TGGCATAGTCTCCATCTCCAGAGTGGACAGGCTGGAACACGACCTACCGCTTTTGGCTTTGGTACCTACA
CCAGCTCTGTTTTACTTGTTTACTGCAAAATTTACCGAACCATCACGGATACTCTCAGAAGGGGCCAATG
GACATTGA

Translation (305 aa):
MACLGLYCGKTLLFKNGSSEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFI
EWYSGKKSSSALFQHITALFECTMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCT
HEAVYPLYTIVFVYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYA
FPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIVSISRVDRLEHDLPLLALVPT
PALFYLFTAKFTEPSRILSEGANGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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