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Report for CCDS88313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88313.1 Public Mus musculus 12 Smc6 23 108 98 CCDS HistoryNCBI Gene:67241Re-query CCDS DB by CCDS ID:88313.1Re-query CCDS DB by GeneID:67241See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218866.1 ENSMUSP00000151976.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218866.1Link to Ensembl Protein Viewer:ENSMUSP00000151976.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218866Re-query CCDS DB by Protein ID:ENSMUSP00000151976
Original member Current member NCBI NM_001361252.1 NP_001348181.1 Accepted alive Link to Nucleotide Sequence:NM_001361252.1Link to Protein Sequence:NP_001348181.1Re-query CCDS DB by Nucleotide ID:NM_001361252Re-query CCDS DB by Protein ID:NP_001348181Link to BLAST:NP_001348181.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348181.1 326 Q924W5-2 326 100% 0 0

Chromosomal Locations for CCDS 88313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 11271734 11271871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11273994 11274111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11276260 11276365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11279605 11279741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11280341 11280402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11282360 11282440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11283071 11283172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11285098 11285217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 11285311 11285427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCCAAAAGAAAGGAAGAAAATTTCTGCTCTCCTGAAAATGCTAAAAGACCAAGACAAGAAGAACTGG
AAGATTTTGATAAAGATGGAGATGAAGATGAATGTACAATTTCTTTCACGAATGGAACATCTACTTTGAC
TGCAGCAGAAGTTGGAATAATTGAGAGTATTCAGCTAAGAAATTTCATGTGTCATTCAATGCTTGGACCT
TTTAAGTTTGGTTCTAACGTCAACTTTGTTGTTGGCAATAATGGAAGTGGGAAGAGTGCTGTGCTCACCG
CACTCATAGTTGGTCTTGGTGGAAAAGCAGTTGCTACTAACAGAGGGTCCTCTTTAAAAGGCTTTGTGAA
AGCTGGACAGAACTCAGCAGATATCTCAATAACATTAAGGAACAGAGGAGATGATGCCTTCAGAGCAAAT
GTGTATGGTGACTCTATAGTTGTGCAGCAACACATTAGCGTGGATGGAAGTCGATCTTACAAACTAAAAA
GTGAAAAAGGCACCGTGGTTTCTACTAGGAAAGAAGAGCTGATTGCAATTCTTGACCATTTTAACATCCA
GGTGGATAATCCGGTTTCTGTTTTAACACAAGAGATGAGCAAGCAGTTCTTACAGTCCAAAAATGAGGGA
GACAAATACAAATTCTTCATGAAAGCAACCCAGCTCGAACAGATGAAGGAAGATTATTCATATATTATGG
AAACAAAAGAAAGAACAAAGGAACAAATAAATCAGGGAGAAGAGCGACTTACTGAACTAAAACGCCAGTG
TTTGGAGAAAGAGGAACGTTTTCAAAATATTGCTGGTTTAAGTACAATGAAGACTAATTTAGAGTACTTG
AAACATGAAATGGCTTGGGCAGTGGTCAATGAAATTGAAAAACAATTGAATGCTATTCGAGACAATATCA
AAATTGGAGAAGAACGTGCTGCAAAACTTGACAGGAAAATGGAAGAGCAGCAGGTACTTCAAGCCTCCTA
A

Translation (326 aa):
MAKRKEENFCSPENAKRPRQEELEDFDKDGDEDECTISFTNGTSTLTAAEVGIIESIQLRNFMCHSMLGP
FKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLKGFVKAGQNSADISITLRNRGDDAFRAN
VYGDSIVVQQHISVDGSRSYKLKSEKGTVVSTRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEG
DKYKFFMKATQLEQMKEDYSYIMETKERTKEQINQGEERLTELKRQCLEKEERFQNIAGLSTMKTNLEYL
KHEMAWAVVNEIEKQLNAIRDNIKIGEERAAKLDRKMEEQQVLQAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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