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Report for CCDS70276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70276.1 Public Mus musculus 11 Septin4 23 108 98 CCDS HistoryNCBI Gene:18952Re-query CCDS DB by CCDS ID:70276.1Re-query CCDS DB by GeneID:18952See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107960.7 ENSMUSP00000103594.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107960.7Link to Ensembl Protein Viewer:ENSMUSP00000103594.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107960Re-query CCDS DB by Protein ID:ENSMUSP00000103594
Original member NCBI NM_001284394.1 NP_001271323.1 Updated not alive Link to Nucleotide Sequence:NM_001284394.1Link to Protein Sequence:NP_001271323.1Re-query CCDS DB by Nucleotide ID:NM_001284394Re-query CCDS DB by Protein ID:NP_001271323
Current member NCBI NM_001284394.2 NP_001271323.1 Accepted alive Link to Nucleotide Sequence:NM_001284394.2Link to Protein Sequence:NP_001271323.1Re-query CCDS DB by Nucleotide ID:NM_001284394Re-query CCDS DB by Protein ID:NP_001271323Link to BLAST:NP_001271323.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271323.1 431 P28661-3 431 100% 0 0

Chromosomal Locations for CCDS 70276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87581166 87581225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87583318 87583614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87583921 87584014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87584399 87584485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87585118 87585241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87588718 87588852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87588968 87589085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589175 87589276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589468 87589564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589656 87589818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87590009 87590027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGACCATTCACTGGGATGGCAAGGGAACTCTGTCCCCGAGGACGGGACTGAAGCTGGGATCAAGCACT
TCCTGGAGGACAGCAGTGATGATGCTGAGCTGAGCAAGTTCGTGAAGGATTTCCCAGGAAGCGAACCCTA
CCACTCAGCGGAGTCCAAGACAAGGGTGGCCAGGCCCCAGATCTTGGAGCCAAGGCCCCAGAGCCCAGAC
CTCTGTGATGATGACGTGGAGTTTAGAGGCTCCTTGTGGCCCCAGCCCTCTGACAGTCAGCAGTACTTCA
GTGCCCCAGCCCCTCTCAGCCCTTCCTCCAGGCCCCGCAGTCCATGGGGCAAGCTTGATCCTTATGATTC
CTCTGAGGATGACAAGGAGTATGTGGGCTTTGCAACCCTCCCCAATCAAGTCCACAGGAAGTCTGTGAAG
AAAGGCTTTGACTTTACACTCATGGTGGCAGGAGAATCTGGTCTGGGTAAATCCACTCTTGTCAACAGCC
TCTTCCTCACTGACTTGTACCGGGATCGGAAACTGCTGGGCGCCGAAGAGCGGATCATGCAAACCGTGGA
GATTACTAAGCACGCAGTGGATATAGAAGAGAAGGGAGTGAGGCTGCGGCTCACCATTGTGGACACTCCA
GGATTTGGGGATGCAGTCAACAACACAGAGTGCTGGAAGCCTGTGGCCGAATACATCGACCAGCAGTTTG
AGCAGTACTTCCGAGACGAGAGTGGCCTGAACCGCAAGAACATCCAGGACAACCGGGTGCACTGCTGCCT
GTACTTCATCTCCCCGTTTGGCCACGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCAG
CGGGTCAACATTGTGCCTATCTTGGCTAAGGCGGACACACTGACGCCTCCTGAAGTGGACCGAAAGAAAT
GCAAAATCCGGGAGGAGATCGAGCACTTTGGAATCAAGATCTATCAGTTCCCAGACTGTGATTCCGATGA
GGACGAGGACTTCAAATTACAGGACCAAGCCCTAAAGGAAAGCATCCCATTTGCGGTGATTGGCAGCAAC
ACTGTGGTAGAAGCCAGGGGGCGGAGAGTTCGAGGCCGCCTCTACCCTTGGGGCATCGTGGAAGTGGAAA
ACCCAGGTCACTGCGACTTTGTCAAGTTGAGGACGATGCTGGTGCGTACCCACATGCAGGACCTAAAGGA
TGTGACCCGAGAGACACACTACGAGAACTACAGGGCACAGTGTATCCAGAGCATGACCCGGCTAGTAGTG
AAGGAACGGAATCGCAAGGACAGATCCAGAAACTGA

Translation (431 aa):
MDHSLGWQGNSVPEDGTEAGIKHFLEDSSDDAELSKFVKDFPGSEPYHSAESKTRVARPQILEPRPQSPD
LCDDDVEFRGSLWPQPSDSQQYFSAPAPLSPSSRPRSPWGKLDPYDSSEDDKEYVGFATLPNQVHRKSVK
KGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTP
GFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQ
RVNIVPILAKADTLTPPEVDRKKCKIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSN
TVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVV
KERNRKDRSRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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