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Report for CCDS70275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70275.1 Public Mus musculus 11 Septin4 23 108 98 CCDS HistoryNCBI Gene:18952Re-query CCDS DB by CCDS ID:70275.1Re-query CCDS DB by GeneID:18952See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122067.7 ENSMUSP00000112960.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122067.7Link to Ensembl Protein Viewer:ENSMUSP00000112960.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122067Re-query CCDS DB by Protein ID:ENSMUSP00000112960
Original member NCBI NM_001284398.1 NP_001271327.1 Updated not alive Link to Nucleotide Sequence:NM_001284398.1Link to Protein Sequence:NP_001271327.1Re-query CCDS DB by Nucleotide ID:NM_001284398Re-query CCDS DB by Protein ID:NP_001271327
Current member NCBI NM_001284398.2 NP_001271327.1 Accepted alive Link to Nucleotide Sequence:NM_001284398.2Link to Protein Sequence:NP_001271327.1Re-query CCDS DB by Nucleotide ID:NM_001284398Re-query CCDS DB by Protein ID:NP_001271327Link to BLAST:NP_001271327.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271327.1 313 P28661-5 313 100% 0 0

Chromosomal Locations for CCDS 70275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87578535 87578537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87583921 87584014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87584399 87584485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87585118 87585241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87588718 87588852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87588968 87589085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589175 87589276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589468 87589564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589656 87589818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87590009 87590027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGATGACAAGGAGTATGTGGGCTTTGCAACCCTCCCCAATCAAGTCCACAGGAAGTCTGTGAAGAAAG
GCTTTGACTTTACACTCATGGTGGCAGGAGAATCTGGTCTGGGTAAATCCACTCTTGTCAACAGCCTCTT
CCTCACTGACTTGTACCGGGATCGGAAACTGCTGGGCGCCGAAGAGCGGATCATGCAAACCGTGGAGATT
ACTAAGCACGCAGTGGATATAGAAGAGAAGGGAGTGAGGCTGCGGCTCACCATTGTGGACACTCCAGGAT
TTGGGGATGCAGTCAACAACACAGAGTGCTGGAAGCCTGTGGCCGAATACATCGACCAGCAGTTTGAGCA
GTACTTCCGAGACGAGAGTGGCCTGAACCGCAAGAACATCCAGGACAACCGGGTGCACTGCTGCCTGTAC
TTCATCTCCCCGTTTGGCCACGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCAGCGGG
TCAACATTGTGCCTATCTTGGCTAAGGCGGACACACTGACGCCTCCTGAAGTGGACCGAAAGAAATGCAA
AATCCGGGAGGAGATCGAGCACTTTGGAATCAAGATCTATCAGTTCCCAGACTGTGATTCCGATGAGGAC
GAGGACTTCAAATTACAGGACCAAGCCCTAAAGGAAAGCATCCCATTTGCGGTGATTGGCAGCAACACTG
TGGTAGAAGCCAGGGGGCGGAGAGTTCGAGGCCGCCTCTACCCTTGGGGCATCGTGGAAGTGGAAAACCC
AGGTCACTGCGACTTTGTCAAGTTGAGGACGATGCTGGTGCGTACCCACATGCAGGACCTAAAGGATGTG
ACCCGAGAGACACACTACGAGAACTACAGGGCACAGTGTATCCAGAGCATGACCCGGCTAGTAGTGAAGG
AACGGAATCGCAAGGACAGATCCAGAAACTGA

Translation (313 aa):
MDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQTVEI
TKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLNRKNIQDNRVHCCLY
FISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDRKKCKIREEIEHFGIKIYQFPDCDSDED
EDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDV
TRETHYENYRAQCIQSMTRLVVKERNRKDRSRN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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