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Report for CCDS69996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69996.1 Public Mus musculus 1 Rcor3 23 108 98 CCDS HistoryNCBI Gene:214742Re-query CCDS DB by CCDS ID:69996.1Re-query CCDS DB by GeneID:214742See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69996.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110849.9 ENSMUSP00000106473.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110849.9Link to Ensembl Protein Viewer:ENSMUSP00000106473.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110849Re-query CCDS DB by Protein ID:ENSMUSP00000106473
Original member NCBI NM_001290278.1 NP_001277207.1 Updated not alive Link to Nucleotide Sequence:NM_001290278.1Link to Protein Sequence:NP_001277207.1Re-query CCDS DB by Nucleotide ID:NM_001290278Re-query CCDS DB by Protein ID:NP_001277207
Current member NCBI NM_001290278.2 NP_001277207.1 Accepted alive Link to Nucleotide Sequence:NM_001290278.2Link to Protein Sequence:NP_001277207.1Re-query CCDS DB by Nucleotide ID:NM_001290278Re-query CCDS DB by Protein ID:NP_001277207Link to BLAST:NP_001277207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277207.1 434 Q6PGA0-2 434 100% 0 0

Chromosomal Locations for CCDS 69996.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 192100920 192101155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192108644 192108701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192116269 192116346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192119915 192120133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192123539 192123617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192124243 192124367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192125866 192126027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192127976 192128028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192130383 192130460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192137433 192137489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192137739 192137898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGCCCGGCATGATGGAGAAAGGGCCCGAGTTACTGGGGAAGAGCCGATCGGCCAACGGCGGCGCCAAGA
GCCCGGCGGGAGGCGGCGGCTCCTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGAGAGCGGCTGCAG
CAGCGACGACGAGCACGGGGATGTTGGGATGAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAATTC
GATCCAGGTGCTACCAAGTACACAGATAAAGACAATGGAGGCATGCTTGTGTGGTCTCCTTATCACAGTA
TCCCAGATGCCAAATTGGATGAATATATCGCCATTGCAAAAGAGAAACATGGCTACAATGTTGAACAGGC
GCTTGGCATGTTGTTCTGGCATAAACACAACATTGAGAAGTCCCTTGCGGACCTCCCTAACTTCACGCCC
TTTCCGGATGAGTGGACAGTGGAAGACAAAGTCCTGTTTGAACAAGCCTTTAGTTTTCATGGGAAGAGCT
TTCACAGGATTCAGCAAATGCTTCCAGATAAGACAATTGCAAGTCTTGTAAAGTATTACTATTCTTGGAA
AAAAACTCGCTCAAGGACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGCCAATAGACACAATCAGGGT
GACAGTGATGATGACGTAGAAGAAGCTCACCCCATGGATGGAAACGACAGTGACTACGACCCAAAGAAAG
AAGCCAAAAGAGAGGGTAACGCTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGGGCCGGAGAGAGTA
CCAGAGTCTGCAGCACCGCCACCACTCTCAGCGCTCCAAGTGCCGCCCTCCTAAGGGCATGTATCTAACC
CAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGG
AGCTGATCTCTCTCAAGCGCCAGGTTCAGAATGCTAAGCAAGTAAACAGTGCACTTAAGCAGAAAATGGA
AGGTGGAATTGAAGAGTTCAAACCGCCTGAGTCAAATCAGAAAATTAATGCCCGTTGGACCACAGAGGAG
CAGCTTCTAGCAGTGCAAGGCACAGACCCCACAGGCTCCTCGGACTCTGGGTCCATCACCTCCTGCCCCA
TCATCCACTCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACAC
TGCCTGCCGCCCCTGCTCTTCACCGACAACCTCCTCCACTCCAGCAGCAGGCTCGGTTCATCCAGCCCCG
GCCAACTCTCAATCAGCCTCCTCCACCTCTCATTCGCCCTGCTAA

Translation (434 aa):
MPGMMEKGPELLGKSRSANGGAKSPAGGGGSSANGGLHFSEPESGCSSDDEHGDVGMRVGAEYQARIPEF
DPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTP
FPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQG
DSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLT
QEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEE
QLLAVQGTDPTGSSDSGSITSCPIIHSNTNSPHCHSEPASTTSSSNTACRPCSSPTTSSTPAAGSVHPAP
ANSQSASSTSHSPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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