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Report for CCDS69995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69995.1 Public Mus musculus 1 Rcor3 23 108 98 CCDS HistoryNCBI Gene:214742Re-query CCDS DB by CCDS ID:69995.1Re-query CCDS DB by GeneID:214742See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073279.12 ENSMUSP00000073004.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073279.12Link to Ensembl Protein Viewer:ENSMUSP00000073004.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000073279Re-query CCDS DB by Protein ID:ENSMUSP00000073004
Original member NCBI NM_144814.3 NP_659063.3 Updated not alive Link to Nucleotide Sequence:NM_144814.3Link to Protein Sequence:NP_659063.3Re-query CCDS DB by Nucleotide ID:NM_144814Re-query CCDS DB by Protein ID:NP_659063
Current member NCBI NM_144814.4 NP_659063.3 Accepted alive Link to Nucleotide Sequence:NM_144814.4Link to Protein Sequence:NP_659063.3Re-query CCDS DB by Nucleotide ID:NM_144814Re-query CCDS DB by Protein ID:NP_659063Link to BLAST:NP_659063.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659063.3 451 Q6PGA0-1 451 100% 0 0

Chromosomal Locations for CCDS 69995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 192100811 192101155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192116269 192116346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192119915 192120133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192123539 192123617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192124243 192124367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192125866 192126027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192127976 192128028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192130383 192130460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192137433 192137489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192137739 192137898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGCCCGGCATGATGGAGAAAGGGCCCGAGTTACTGGGGAAGAGCCGATCGGCCAACGGCGGCGCCAAGA
GCCCGGCGGGAGGCGGCGGCTCCTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGAGAGCGGCTGCAG
CAGCGACGACGAGCACGGGGATGTTGGGATGAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAATTC
GATCCAGGTGCTACCAAGTACACAGATAAAGACAATGGAGGCATGCTTGTGTGGTCTCCTTATCACAGTA
TCCCAGATGCCAAATTGGATGAATATATCGCCATTGCAAAAGAGAAACATGGCTACAATGTTGAACAGGC
GCTTGGCATGTTGTTCTGGCATAAACACAACATTGAGAAGTCCCTTGCGGACCTCCCTAACTTCACGCCC
TTTCCGGATGAGTGGACAGTGGAAGACAAAGTCCTGTTTGAACAAGCCTTTAGTTTTCATGGGAAGAGCT
TTCACAGGATTCAGCAAATGCTTCCAGATAAGACAATTGCAAGTCTTGTAAAGTATTACTATTCTTGGAA
AAAAACTCGCTCAAGGACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGCCAATAGACACAATCAGGGT
GACAGTGATGATGACGTAGAAGAAGCTCACCCCATGGATGGAAACGACAGTGACTACGACCCAAAGAAAG
AAGCCAAAAGAGAGGGTAACGCTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGGGCCGGAGAGAGTA
CCAGAGTCTGCAGCACCGCCACCACTCTCAGCGCTCCAAGTGCCGCCCTCCTAAGGGCATGTATCTAACC
CAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGG
AGCTGATCTCTCTCAAGCGCCAGGTTCAGAATGCTAAGCAAGTAAACAGTGCACTTAAGCAGAAAATGGA
AGGTGGAATTGAAGAGTTCAAACCGCCTGAGGCACAGACCCCACAGGCTCCTCGGACTCTGGGTCCATCA
CCTCCTGCCCCATCATCCACTCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTC
TTCGTCCAACACTGCCTGCCGCCCCTGCTCTTCACCGACAACCTCCTCCACTCCAGCAGCAGGCTCGGTT
CATCCAGCCCCGGCCAACTCTCAATCAGCCTCCTCCACCTCTCATTCGCCCTGCTAACTCCATGCCACCC
CGCCTAAACCCAAGACCAGTGTTGACCACGGTTGGCGGTCAGCAGCCACCTTCACTCATTGGGATTCAGA
CAGATTCACAGCCTTCACTGCACTAA

Translation (451 aa):
MPGMMEKGPELLGKSRSANGGAKSPAGGGGSSANGGLHFSEPESGCSSDDEHGDVGMRVGAEYQARIPEF
DPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTP
FPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQG
DSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLT
QEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPEAQTPQAPRTLGPS
PPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPP
RLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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